| 1958 | The Best of Muddy Waters | Muddy Waters | | 10 |
| 1970 | Chicago Bound | Jimmy Rogers with Little Walter & Muddy Waters | | 3 |
| 1971 | McKinley Morganfield A.K.A. Muddy Waters | Muddy Waters | | 1 |
| 1971 | Back in the Early Days, Volumes 1 and 2 | Muddy Waters | | 1 |
| 1971 | We Three Kings | Muddy Waters / Little Walter / Howlin’ Wolf | | 1 |
| 1982 | Blues Roots, Volume 11: I'm a Country Boy | Muddy Waters | | 1 |
| 1982 | Muddy & The Wolf | Muddy Waters / Howlin’ Wolf | | 2 |
| 1983 | In Memoriam | Muddy Waters | | 1 |
| 1983 | Rolling Stone | Muddy Waters | | 1 |
| 1984 | Muddy Waters on CHESS, Vol. 1: “1948–1951” | Muddy Waters | | 1 |
| 1984 | Muddy Waters on CHESS, Vol. 2: “1951–1959” | Muddy Waters | | 1 |
| 1984 | The Original Hoochie Coochie Man | Muddy Waters | | 3 |
| 1985 | Muddy Waters (The Chess Box) | Muddy Waters | | 1 |
| 1986 | Muddy Waters Sings Big Bill Broonzy / Folk Singer | Muddy Waters | | 2 |
| 1987 | The Muddy Waters Collection: 20 Blues Greats | Muddy Waters | | 1 |
| 1988 | More Real Folk Blues | Muddy Waters | | 3 |
| 1988 | Hoochie Coochie Man | Muddy Waters | 3 | 2 |
| 1988 | Masters of the Blues: The Best of Muddy Waters | Muddy Waters | | 2 |
| 1988 | Muddy Waters | Muddy Waters | | 1 |
| 1988 | They Call Me Muddy Waters | Muddy Waters | | 1 |
| 1988 | They Call Me Muddy Waters: 16 Blues Classics | Muddy Waters | | 1 |
| 1989 | The Muddy Waters Story | Muddy Waters | | 1 |
| 1989 | Trouble No More: Singles (1955–1959) | Muddy Waters | 5 | 5 |
| 1989 | The Chess Box | Muddy Waters | | 1 |
| 1989 | Rollin' Stone | Muddy Waters | | 1 |
| 1989 | The Muddy Waters Collection | Muddy Waters | | 1 |
| 1990 | Chicago-London | Muddy Waters | | 1 |
| 1990 | The Real Folk Blues | Muddy Waters | | 2 |
| 1990 | Blues Anthology | Muddy Waters | | 1 |
| 1990 | Muddy Waters | Muddy Waters | 5 | 1 |
| 1990 | Rollin' & Tumblin' | Muddy Waters | | 1 |
| 1990 | They Call Me Muddy Waters | Muddy Waters | | 2 |
| 1990 | The Father of Chicago Blues | Muddy Waters | | 1 |
| 1990 | They Call Me Muddy Waters | Muddy Waters | | 1 |
| 1990 | They Call Me Muddy Waters | Muddy Waters | | 1 |
| 1991 | Rare and Unissued | Muddy Waters | | 2 |
| 1991 | Anthology: The Finest Recordings | Muddy Waters | | 1 |
| 1991 | Muddy Waters | Muddy Waters | | 1 |
| 1991 | The Essential Recordings | Muddy Waters | | 1 |
| 1992 | Got My Mojo Working | Muddy Waters | | 2 |
| 1992 | Blues Sky | Muddy Waters | | 1 |
| 1992 | Baby Please Don't Go | Muddy Waters | | 3 |
| 1992 | Charly Blues Masterworks, Volume 10: Rock Me | Muddy Waters | | 1 |
| 1992 | Charly Blues Masterworks, Volume 15: Live Action! | Sonny Boy Williamson, Muddy Waters, Howlin’ Wolf, Buddy Guy & Willie Dixon | | 1 |
| 1992 | Down South Blues | Muddy Waters | | 1 |
| 1992 | Got My Mojo Working | Muddy Waters | | 1 |
| 1992 | Gold | Muddy Waters | | 2 |
| 1992 | Library of Congress Recordings (1941-1942)/Early Commercial Recordings (1946-1950) | Muddy Waters | | 1 |
| 1992 | The Complete Muddy Waters, 1947–1967 | Muddy Waters | | 1 |
| 1992 | The Muddy Waters Gold Collection | Muddy Waters | | 1 |
| 1993 | Charly Blues Masterworks, Volume 39: Funky Butt | Muddy Waters | | 1 |
| 1993 | 28 Great Blues Songs | Muddy Waters | | 1 |
| 1993 | Anthology | Muddy Waters | | 1 |
| 1993 | Hoochie Coochie Man | Muddy Waters | | 1 |
| 1993 | Hoochie Coochie Man | Muddy Waters | | 2 |
| 1993 | The Complete Plantation Recordings | Muddy Waters | | 4 |
| 1993 | The Great Muddy Waters | Muddy Waters | | 1 |
| 1994 | One More Mile: Chess Collectibles, Volume 1 | Muddy Waters | | 1 |
| 1994 | My Home Is in the Delta | Muddy Waters | | 1 |
| 1994 | Double Goldies | Muddy Waters | | 1 |
| 1994 | John Lee Hooker / Muddy Waters | John Lee Hooker / Muddy Waters | | 1 |
| 1994 | The Very Best of Muddy Waters: The Millenium Edition | Muddy Waters | | 1 |
| 1995 | Baby Please Don't Go (Real Blues) | Muddy Waters | | 1 |
| 1995 | Chicago Blues Masters, Volume 1 | Muddy Waters & Memphis Slim | | 1 |
| 1995 | Electric Mud & More | Muddy Waters | | 1 |
| 1995 | The Original Rollin' Stone | Muddy Waters | 3 | 1 |
| 1995 | The Blues | Muddy Waters | | 1 |
| 1995 | The Very Best Of | Muddy Waters | | 1 |
| 1996 | Rollin' and Tumblin' | Muddy Waters | | 1 |
| 1996 | Hoochie Coochie Man | Muddy Waters | | 2 |
| 1996 | Muddy Waters at Newport / Muddy Waters Live | Muddy Waters | | 1 |
| 1996 | Mannish Boy | Muddy Waters | | 1 |
| 1996 | Mississippi Rolling Stone | Muddy Waters | | 1 |
| 1996 | Two Great Guitars / The Super Super Blues Band | Chuck Berry & Bo Diddley / Howlin’ Wolf, Muddy Waters & Bo Diddley | | 1 |
| 1996 | The Collection | Muddy Waters | | 1 |
| 1997 | His Best, 1947 to 1955 | Muddy Waters | 4 | 3 |
| 1997 | His Best, 1956 to 1964 | Muddy Waters | | 1 |
| 1997 | King of the Electric Blues | Muddy Waters | | 2 |
| 1997 | Going Way Back | Muddy Waters & Friends | | 2 |
