| 1976 | René Clemencic et ses flûtes | René Clemencic | | 4 |
| 1981 | Serenata a tre | Vivaldi; Clemencic Consort, René Clemencic | | 3 |
| 1985 | Missa Prolationum / 6 chansons | Johannes Ockeghem; Clemencic Consort, René Clemencic | | 1 |
| 1986 | Missa sine nomine | Guillaume Dufay; Clemencic Consort, René Clemencic | | 1 |
| 1987 | Le Combat du Dragon (Drachenkampf) | René Clemencic; Anonymous Brass Quintet, Tom Henkes, Wolfgang Reithofer, René Clemencic | | 1 |
| 1990 | Carmina Burana | Clemencic Consort, René Clemencic | | 1 |
| 1990 | La Purpura de la Rosa | Tomás de Torrejón y Velasco; Ensemble La Cappella, Orchestre Baroque du Clemencic Consort, René Clemencic | | 1 |
| 1991 | Sonates pour Flûte | Marcello; René Clemencic | 3 | 1 |
| 1993 | Missa Sine nomine / Missa Ecce ancilla Domini | Dufay; Clemencic Consort, René Clemencic | 5 | 1 |
| 1995 | Requiem | Johann Joseph Fux; Clemencic Consort, René Clemencic | | 1 |
| 1996 | Canzoni et sonate da sonar con ogni sorte de instrumenti | Giovanni Gabrieli; Consort Fontegara, René Clemencic | | 1 |
| 1996 | Johannes Kugelmann: Concentus Novi | Johannes "Hans" Kugelmann; René Clemencic, Clemencic Consort, Sibyl Kubelka, Michael Posch, Bernhard Landauer | | 1 |
| 1996 | Klingende Kathedralen - Cathedral Sounds | John Dunstable : Clemencic Consort, Bernd Lambauer, Johannes Chum, Colin Mason / René Clemencic | | 1 |
| 1998 | Klingende Kathedralen | Johannes Ockeghem; Clemencic Consort, René Clemencic | 4 | 1 |
| 1998 | Troubadores | Clemencic Consort; René Clemencic | | 1 |
| 2000 | Missa Dolorosa / Stabat Mater | Antonio Caldara; Coro della Radio Svizzera Italiana, Aura Musicale, Budabest, René Clemencic | | 1 |
| 2000 | Le Devin du Village | Jean‐Jacques Rousseau; Eva Kirchner, Dongkyu Choy, Thomas Müller de Vries, Coro "Gottardo Tomat" di Spilimbergo, Alpe Adria Ensemble, René Clemencic | | 2 |
| 2001 | La Messe de Nostre Dame | Guillaume de Machaut; Clemencic Consort, René Clemencic | | 1 |
| 2002 | Chansons - Missa Ferialis, Magnificat | Gilles Binchois; Clemencic Consort, René Clemencic | | 1 |
| 2008 | The Tabulature Of Johannes Von Lublin | René Clemencic | | 1 |
| 2009 | Salve Regina / Stabat Mater | Pergolesi; Clemencic Consort, René Clemencic, Mieke van der Sluis, Gérard Lesne | | 2 |
| 2012 | Glogauer Liederbuch | Clemencic Consort, René Clemencic | | 1 |
| — | Il giardino d'amore | Alessandro Scarlatti; Clemencic Consort, René Clemencic | | 1 |
| — | René Clemencic et Esmail Vasseghi | René Clemencic, Esmail Vasseghi | | 1 |
| — | Répertoire pour les jeunes flûtistes | René Clemencic & Hopkinson Smith | | 2 |
