| 1959 | Berg: Sonata for Piano, op. 1 / Schoenberg: Three Piano Pieces, op. 11 / Křenek: Sonata no. 3 for Piano, op. 92, no. 4 | Berg, Schönberg, Křenek; Glenn Gould | 1 | 3 |
| 1986 | Streichtrios der Neuen Wiener Schule | Krenek, Schönberg, Webern; Wiener Streichtrio | | 1 |
| 1992 | Lamentatio Jeremiæ Prophetæ | Ernst Krenek; Netherlands Chamber Choir, Uwe Gronostay | | 1 |
| 1993 | Jonny spielt auf | Krenek; Leipzig Opernchor, Gewandhausorchester Leipzig, Lothar Zagrosek | | 3 |
| 1995 | Lamentatio Jeremiæ Prophetæ | Ernst Krenek; RIAS Kammerchor, Marcus Creed | | 2 |
| 1995 | The Glenn Gould Edition: Hindemith: Das Marienleben / Krenek & Strauss: Lieder | Hindemith, Krenek, Strauss; Roxolana Roslak, Glenn Gould | | 1 |
| 1996 | Violin Concertos | Erich Wolfgang Korngold, Kurt Weill, Ernst Krenek; Chantal Juillet, Rundfunk-Sinfonieorchester Berlin, John Mauceri | | 1 |
| 1997 | Symphony no. 2 | Krenek; Gewandhausorchester Leipzig, Lothar Zagrosek | | 1 |
| 1999 | The Complete Works for Cello | Ernst Krenek; David Geringas, Deutsches Symphonie‐Orchester Berlin, Hanns‐Martin Schneidt | | 1 |
| 2001 | Violin Concertos no. 1 & 2 / Double Concerto for Violin and Piano | Ernst Krenek; Peter Rosenberg, Gabriel Rosenberg, Bamberger Symphoniker, Florian Merz | | 1 |
| 2003 | The Organ Works | Ernst Krenek; Martin Haselböck, Ernst Kovacic, Jeff von der Schmidt | | 1 |
| 2004 | The Legacy of Maria Yudina, Volume 2 | Ernst Krenek, Igor Stravinsky, Béla Bartók, Paul Hindemith; Maria Yudina | | 1 |
| 2010 | Sechs Motetten nach Worten von Franz Kafka | Ernst Krenek; Caroline Stein, Philip Mayers, RIAS Kammerchor, Hans-Christoph Rademann | | 1 |
| 2013 | The 20th-century Concerto Grosso | Schulhoff, Krenek, D'Indy; Maria Prinz, Karl-Heinz Schütz, Christoph Koncz, Robert Nagy, Academy of St Martin in the Fields, Sir Neville Marriner | | 1 |
| 2013 | Works for Violin: Sonatas / Triophantasie | Ernst Krenek; Christoph Schickedanz, Holger Spegg, Mathias Beyer-Karlshoj | | 1 |
| 2016 | Reisebuch aus den österreichischen Alpen | Krenek; Florian Boesch, Roger Vignoles | | 2 |
| 2017 | Drang in die Ferne | Schubert, Mahler, Krenek; Erwin Belakowitsch, Christoph Berner | | 1 |
| 2018 | Gedankenverloren | Schubert, Krenek, Strauss, Trojahn; Katharina Konradi, Gerold Huber | | 1 |
| 2020 | Schubert: Symphony in C major ("The Great") / Křenek: Static and Ecstatic | Schubert, Křenek; The Cleveland Orchestra, Franz Welser‐Möst | | 1 |
| 2023 | Early Piano Works of Ernst Krenek | Ernst Krenek; Mikhail Korzhev | | 1 |
| — | Oboe - Solo and Accompanied | Britten, Krenek, Doráti; Helén Jahren, Elisabeth Westenholz | | 1 |
