| Afterture | Metaphor | | | 3:15 | |
| Assumption | Metaphor | | | 2:19 | |
| Battle of the Archons | Metaphor | | | 10:24 | |
| Beez in the Birds (feat. Kristen) | Metaphor | | | 5:07 | |
| Bird Brain | Metaphor | | | 4:50 | |
| Bruises and Blisters | Metaphor | | | 5:52 | |
| Call Me Old and Uninspired or Maybe Even Lazy and Tired but Thirteen Heads in the Backyard Says You're Wrong | Metaphor | | | 3:31 | |
| Challalla Khaeri | Metaphor | | | 11:46 | |
| Chaos With a Crown of Gold | Metaphor | | | 6:00 | |
| Clear the Stagnation | Metaphor | | | 4:06 | |
| Dazed | Metaphor | | | 5:14 | |
| Death in Eden | Metaphor | | | 8:09 | |
| Deus Vult | Metaphor | | | 5:20 | |
| Don’t Sleep | Metaphor | | | 9:00 | |
| Flower Harvest | Metaphor | | | 1:52 | |
| For the Moon | Metaphor | | | 7:12 | |
| Galatea | Metaphor | | | 7:43 | |
| Garden Building | Metaphor | | | 1:51 | |
| God Will Break Your Heart | Metaphor | | | 6:47 | |
| In the Cave | Metaphor | | | 9:13 | |
| Inquisition | Metaphor | | | 4:44 | |
| Ladder From the Sky | Metaphor | | | 6:54 | |
| Lying Down with Dogs | Metaphor | | | 6:15 | |
| Mother Night | Metaphor | | | 4:52 | |
| One Pulse | Metaphor | | | 5:11 | |
| Raking the Bones | Metaphor | | | 7:44 | |
| Raking the Bones | Metaphor | | | 7:43 | |
| Remembering | Metaphor | | | 7:20 | |
| Robed in Glory | Metaphor | | | 7:30 | |
| Romancing the Wurm | Metaphor | | | 6:34 | |
| Seed | Metaphor | | | 10:10 | |
| Sick for What the Heart Wants | Metaphor | | | 2:55 | |
| Socrates | Metaphor | | | 7:59 | |
| Song From a Nearby Star | Metaphor | | | 1:52 | |
| Starfooted in a Garden of Cans | Metaphor | | | 15:07 | |
| Stella Maris | Metaphor | | | 6:17 | |
| Stranded | Metaphor | | | 8:25 | |
| The Bridal Chamber | Metaphor | | | 2:42 | |
| The Eagle, The Voice, The Light | Metaphor | | | 3:03 | |
| The Illusion of Flesh | Metaphor | | | 2:08 | |
| The Love Letter | Metaphor | | | 9:31 | |
| The Mist of Forgetting | Metaphor | | | 7:03 | |
| The Open Road | Metaphor | | | 8:43 | |
| Truffle Shuffle (feat. Timonkey) | Metaphor | | | 6:12 | |
| We Are Many and They Are Few | Metaphor | | | 2:56 | |
| Wheel of the World | Metaphor | | | 7:56 | |
| When It All Comes Together | Metaphor | | | 4:18 | |
| When It All Comes Together | Metaphor | | | 4:17 | |
| Yes and No | Metaphor | | | 17:50 | |
