| 1982 | Cantate di Natale | Christian August Jacobi, Johann Joseph Fux, Johann Heinrich Schmelzer, Jan Dismas Zelenka; Peter Schreier, Cappella Sagittariana Dresden, Dietrich Knothe | | 1 |
| 1995 | Requiem | Johann Joseph Fux; Clemencic Consort, René Clemencic | | 2 |
| 1997 | Missa Corporis Christi / Motets | Johann Joseph Fux; Cordier, Minter, Chum, Mertens, Wiener Akademie, Martin Haselböck | | 1 |
| 2001 | Exceptional Masterpieces | Sammartini, Merula, Marini, Endler, Biber, Fux; Combattimento Consort Amsterdam, Jan Willem de Vriend | | 1 |
| 2002 | Pièces pour clavecin | Johann Joseph Fux; Dorota Cybulska-Amsler | | 1 |
| 2006 | La Grandezza della Musica Imperiale: Composizioni per orchestra | Johann Joseph Fux; Freiburger Barockorchester | | 1 |
| 2008 | Alla turca: Oeuvres instrumentales et vocales à la cour de Charles VI à Vienne | Fux, Badia, Caldara; Monika Mauch, Ensemble Caprice, Matthias Maute | | 1 |
| 2016 | Requiems | Johann Caspar Kerll, Johann Joseph Fux; Vox Luminis, Lionel Meunier | | 2 |
| 2017 | Complete Music for Harpsichord | Johann Joseph Fux; Filippo Emanuele Ravizza | | 1 |
| 2018 | Auff die Maÿerin | J. S. Bach, J. J. Froberger, J. J. Fux, G. F. Handel; Kärt Ruubel | | 1 |
| 2023 | La corona d’Arianna | Johann Joseph Fux; Zefiro, Alfredo Bernardini, Piccinini, Colombo, Kielland, Tomkiewicz, Li, Arnold Schoenberg Chor | | 1 |
| 2024 | Méditation | Bach, Couperin, Fischer, Froberger, Fux, Staier; Andreas Staier | | 1 |
| — | Divoti Affetti: Early Music at the Court at Dresden | Giovanni Alberto Ristori, Johann David Heinichen, Johann Joseph Fux; Tamara Matthews, Jennifer Lane, Timothy Burris, New York Baroque & Eric Milnes | | 1 |
| — | Johann Joseph Fux: Sonata for Violins in F major / Wolfgang Amadeus Mozart: Serenata Notturna in D major, K. 239 | Johann Joseph Fux, Wolfgang Amadeus Mozart; London Baroque Orchestra, Karl Haas | | 1 |
| — | Sonaten aus Dresden | Johann Wilhelm Furchheim, Pietro Andrea Ziani, Clemens Thieme, Johann Joseph Fux; Musica Antiqua Köln & Reinhard Goebel | | 1 |
| — | Works for Keyboard | J. J. Fux, J. Haydn; Robert Kohnen | | 1 |
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