| 1988 | The Crumb | Lydia Lunch, Thurston Moore & The Honeymoon in Red Orchestra | | 1 |
| 1994 | Shamballa | William Hooker duets with Thurston Moore and Elliott Sharp | | 1 |
| 1995 | Psychic Hearts | Thurston Moore | | 2 |
| 1995 | Klangfarbenmelodie... and the Colorist Strikes Primitiv | Thurston Moore & Tom Surgal | | 2 |
| 1996 | Piece for Jetsun Dolma | Thurston Moore & Tom Surgal & William Winant | | 1 |
| 1997 | Pillow Wand | Nels Cline & Thurston Moore | | 1 |
| 1997 | Legend of the Blood Yeti | The Thirteen Ghosts with Derek Bailey and Thurston Moore | | 1 |
| 1997 | Mmmr | Loren MazzaCane Connors, Jean-Marc Montera, Thurston Moore, Lee Ranaldo | | 1 |
| 1998 | Piece for Yvonne Rainer | Thurston Moore | | 1 |
| 1999 | The Promise | Thurston Moore, Evan Parker, Walter Prati | | 1 |
| 2000 | Fuck Shit Up | Christian Marclay / Thurston Moore / Lee Ranaldo | | 1 |
| 2000 | New York - Ystad | Thurston Moore, Lee Ranaldo, Steve Shelley, Mats Gustafsson | | 1 |
| 2001 | Three Incredible Ideas | Thurston Moore, Walter Prati, Giancarlo Schiaffini | | 1 |
| 2004 | From the Earth to the Spheres, Volume 1 | Thurston Moore / My Cat Is an Alien | | 1 |
| 2006 | Melbourne Direct | Steve Shelley, Jim O’Rourke, Thurston Moore, Lee Ranaldo | | 1 |
| 2007 | Black Weeds / White Death | Thurston Moore | | 1 |
| 2007 | Trees Outside the Academy | Thurston Moore | | 2 |
| 2007 | Free / Love | Thurston Moore | | 1 |
| 2008 | Built for Lovin' | Thurston Moore | | 1 |
| 2008 | Sensitive / Lethal | Thurston Moore | | 1 |
| 2008 | Untitled | Paul Flaherty / Thurston Moore / Bill Nace | | 1 |
| 2009 | Senso | White Out with Jim O’Rourke and Thurston Moore | | 1 |
| 2009 | Kommissar Hjuler und Mama Baer / Thurston Moore | Kommissar Hjuler und Mama Baer / Thurston Moore | | 1 |
| 2010 | Suicide Notes for Acoustic Guitar | Thurston Moore | | 1 |
| 2011 | Demolished Thoughts | Thurston Moore | | 4 |
| 2011 | 12-String Meditations For Jack Rose | Thurston Moore | | 1 |
| 2012 | YOKOKIMTHURSTON | Yoko Ono, Kim Gordon & Thurston Moore | | 1 |
| 2012 | Fundamental Sunshine | Thurston Moore / John Moloney | | 1 |
| 2013 | The Only Way to Go Is Straight Through | Thurston Moore & Loren Connors | | 1 |
| 2013 | "@" | John Zorn & Thurston Moore | | 1 |
| 2013 | Vi är alla Guds slavar | Mats Gustafsson / Thurston Moore | | 1 |
| 2013 | Banjaxed Blues | Moore / Moloney: Caught on Tape | | 1 |
| 2014 | The Best Day | Thurston Moore | | 2 |
| 2014 | The Rust Within Their Throats | Thurston Moore and Margarida Garcia | | 1 |
| 2015 | Full Bleed | Thurston Moore / John Moloney: Caught on Tape | | 1 |
| 2015 | Jooklo Duo meets Thurston Moore and Dylan Nyoukis | Jooklo Duo meets Thurston Moore and Dylan Nyoukis | | 1 |
| 2015 | Cuts of Guilt, Cuts Deeper | Merzbow, Mats Gustafsson, Thurston Moore & Balázs Pándi | | 3 |
| 2015 | Hit The Wall! | Mats Gustafsson & Thurston Moore | | 1 |
| 2016 | Heretics | Anne-James Chaton, Thurston Moore & Andy Moor | | 1 |
| 2016 | Marshmallow Moon Decorum | Thurston Moore / Frank Rosaly | | 1 |
| 2017 | Rock n Roll Consciousness | Thurston Moore | | 2 |
| 2017 | Dunia | Thurston Moore & Umut Çağlar | | 1 |
| 2018 | Electronic Music for Piano | John Cage; Tania Chen, Thurston Moore, David Toop, Jon Leidecker | | 1 |
| 2019 | Spirit Counsel | Thurston Moore | | 2 |
| 2020 | By the Fire | Thurston Moore | | 1 |
