| 1987 | Arien | Händel, Mozart; Jochen Kowalski, Kammerorchester C.Ph.E. Bach, Hartmut Haenchen | | 1 |
| 1989 | Orfeo ed Euridice (1988 Berlin studio cast) | Christoph Willibald Gluck; Jochen Kowalski, Dagmar Schellenberger-Ernst, Christian Fliegner, Rundfunkchor Berlin, Kammerorchester Carl Philipp Emanuel Bach, Hartmut Haenchen | | 1 |
| 1991 | Sacred Music for Solo Voices & Orchestra I | Antonio Vivaldi; Margaret Marshall, Jochen Kowalski, Concertgebouw Chamber Orchestra, Vittorio Negri | | 1 |
| 1991 | Sacred Music For Solo Voices & Orchestra II | Vivaldi; Margaret Marshall, Jochen Kowalski, Nico van der Meel, Concertgebouw Kamerorkest, Vittorio Negri | | 1 |
| 1991 | Sacred Music for Solo Voices and Orchestra III | Antonio Vivaldi; Jochen Kowalski, Concertgebouw Kamerorkest, Vittorio Negri, Margaret Marshall, Nico van der Meel, Anton Scharinger | | 1 |
| 1993 | Schwanengesang | Heinrich Schütz; Jochen Kowalski, Werner Marschall, Berliner Solisten, Capella Sagittariana, Dietrich Knothe | | 1 |
| 1993 | Carmina Burana | Carl Orff; Jo, Kowalski, Skovhus, London Philharmonic Choir, The London Philharmonic, Zubin Mehta | | 6 |
| 1993 | Arien aus der Berliner Operngeschichte | Jochen Kowalski, Kammerorchester Berlin, Max Pommer | | 1 |
| 1995 | Bach Kantaten BWV 35, BWV 169, BWV 49 | Johann Sebastian Bach; Jochen Kowalski, Hartmut Haenchen | | 1 |
| 1999 | Theodora | George Frideric Handel; Roberta Alexander, Hans Peter Blochwitz, Jochen Kowalski, Jard van Nes, Anton Scharinger, Arnold Schoenberg Chor, Concentus Musicus Wien, Nikolaus Harnoncourt | | 1 |
| 2002 | The Russian Opera Album | Jochen Kowalski | | 1 |
| 2008 | Handel, Bach: Sacred Arias | Jochen Kowalski | | 1 |
| 2008 | Jochen Kowalski Barockarien | Jochen Kowalski | | 1 |
| — | Stabat Mater / Salve Regina | Antonio Vivaldi; Jochen Kowalski, Nico van der Meel, John Constable, Raphael Alpermann, Concertgebouw Chamber Orchestra, Vittorio Negri | | 1 |
