| 1996 | A Life in Music, Volume 27: Violin Sonatas | Franck, Debussy, Enesco; Isaac Stern, Alexander Zakin | | 1 |
| 1996 | Encores With Piano | Isaac Stern, Alexander Zakin | | 1 |
| 1996 | Hindemith, Copland: Violin Sonatas / Bloch: Violin Sonata / Baal Shem | Hindemith, Copland, Bloch; Isaac Stern | | 1 |
| 1997 | Piano Concerto / Violin Concerto / Adagio for Strings / Second Essay for Orchestra / Overture to the School of Scandal | Samuel Barber; John Browning, Isaac Stern, George Szell, Leonard Bernstein, Eugene Ormandy, Thomas Schippers | | 3 |
| 1998 | Isaac Stern plays Mozart | Mozart; Isaac Stern | | 1 |
| 1998 | Bernstein Century: Bach: Piano Concerto BWV1052 / Violin Concerto BWV1042 / Concerto for Oboe and Violin BWV1060 / Vivaldi: Piccolo Concerto | Bach, Vivaldi; Columbia Symphony Orchestra, New York Philharmonic, Leonard Bernstein, Glenn Gould, Isaac Stern, Harold Gomberg, William Heim | | 1 |
| 1998 | Bernstein Century: The Age of Anxiety / Serenade After Plato's "Symposium" | Leonard Bernstein; Symphony of the Air, The New York Philharmonic Orchestra, Lukas Foss, Isaac Stern, Leonard Bernstein | | 1 |
| 1999 | My First 79 Years: A Musical Celebration | Isaac Stern | | 1 |
| 1999 | Violin Concertos | Mendelssohn, Tchaikovsky; Isaac Stern | | 1 |
| 2002 | In Tribute and Celebration | Isaac Stern | | 1 |
| 2002 | Arabesque / Images / Clair de Lune / Prélude / Danse / Rhapsodie / Sonata / La Mer / Estampes / Nocturnes / Quartet / Suite / Golliwogg | Debussy; Philadelphia Orchestra, Isaac Stern, Paul Crossley | | 1 |
| 2002 | Symphonies Nos. 1-9 / Overtures / Violin Concerto | Beethoven; Isaac Stern, New York Philharmonic, Leonard Bernstein | | 1 |
| 2002 | L'Arte di Isaac Stern | Wieniawski, Bruch, Čaikovskij; Stern | | 1 |
| 2004 | Isaac Stern | Schubert, Brahms, Bach; Isaac Stern | | 1 |
| 2006 | Sinfonía concertante / Concierto 22 para piano y orquesta | Mozart; Pablo Casals, Stern, Serkin, Primrose, Perpignan Festival Orchestra | | 1 |
| 2009 | Original Album Classics | Isaac Stern | | 1 |
| 2011 | The Seasons / 4 Double Concertos | Vivaldi; The Philadelphia Orchestra, Eugene Ormandy, Anshel Brusilow, Isaac Stern, David Oistrakh | | 1 |
| 2011 | Isaac Stern plays Beethoven | Isaac Stern | | 1 |
| 2012 | Treasures of Chamber Music, Volume 2 | Emanuel Ax, Juilliard String Quartet, Kim Kashkashian, Gidon Kremer, Jaime Laredo, Yo‐Yo Ma, Jean-Pierre Rampal, Mstislav Rostropovich, Rudolf Serkin, Isaac Stern, Tal & Groethuysen | | 1 |
| 2013 | Eugene Ormandy Conducts Tchaikovsky | Tchaikovsky; Eugene Ormandy, Gary Graffman, Isaac Stern, The Philadelphia Orchestra | | 1 |
| 2014 | Isaac Stern Plays Brahms | Johannes Brahms; Isaac Stern | | 1 |
| 2015 | Eugene Ormandy Conducts Sibelius | Sibelius; Dylana Jenson, Isaac Stern, The Philadelphia Orchestra, Eugene Ormandy | | 1 |
| 2015 | Stravinsky Conducts Stravinsky: Symphonies and Concertos | Igor Stravinsky; Columbia Symphony Orchestra, Entremont, Rosen, Stern, Craft | | 1 |
| — | Isaac Stern plays Mozart, Beethoven, Haydn | Franz Liszt Chamber Orchestra, Isaac Stern | | 1 |
| — | Isaac Stern & Jean-Pierre Rampal play Vivaldi & Telemann | Vivaldi, Telemann; Isaac Stern, Jean-Pierre Rampal, Jerusalem Music Center Chamber Orchestra | | 1 |
| — | Violin Concertos | Brahms, Dvořák; Isaac Stern, The Philadelphia Orchestra, Eugene Ormandy | | 1 |
