| 1966 | Greatest Hits | Flatt & Scruggs | | 1 |
| 1967 | Hear the Whistles Blow: Lester Flatt and Earl Scruggs Sing Songs of Rivers & Rails | Lester Flatt & Earl Scruggs | | 1 |
| 1970 | 20 All‐Time Great Recordings in a Deluxe 2‐Record Set | Flatt & Scruggs | | 2 |
| 1970 | Dvorana slávy: Country & Western | Johnny Cash / Johnny Horton / Marty Robbins / Lester Flatt & Earl Scruggs | | 1 |
| 1970 | The Golden Hits of Lester Flatt and Earl Scruggs | Lester Flatt & Earl Scruggs with The Foggy Mountain Boys | | 2 |
| 1973 | A Boy Named Sue | Lester Flatt & Earl Scruggs | | 1 |
| 1976 | Vol. 1 | Lester Flatt, Earl Scruggs & The Foggy Mountain Boys | | 1 |
| 1976 | Vol. 2 | Lester Flatt, Earl Scruggs & The Foggy Mountain Boys | | 1 |
| 1977 | The Golden Years | Lester Flatt & Earl Scruggs and The Foggy Mountain Boys | | 2 |
| 1978 | Blue Ridge Cabin Home | Lester Flatt & Earl Scruggs & The Foggy Mountain Boys | | 2 |
| 1978 | The Original Bluegrass Band | Bill Monroe and His Blue Grass Boys with Lester Flatt & Earl Scruggs | | 1 |
| 1982 | Columbia Historic Edition | Lester Flatt & Earl Scruggs | | 2 |
| 1986 | 20 Greatest Hits | Lester Flatt & Earl Scruggs | | 1 |
| 1987 | The Mercury Sessions, Volume 1 | Lester Flatt & Earl Scruggs | | 1 |
| 1991 | 1948–1959 | Lester Flatt & Earl Scruggs | | 1 |
| 1992 | The Complete Mercury Sessions | Lester Flatt & Earl Scruggs | | 1 |
| 1992 | Don't Get Above Your Raisin | Lester Flatt & Earl Scruggs | | 1 |
| 1994 | On Foggy Mountain | Lester Flatt & Earl Scruggs | | 1 |
| 1994 | 1959–1963 | Flatt & Scruggs | | 1 |
| 1995 | You Can Feel It in Your Soul | Lester Flatt & Earl Scruggs | | 1 |
| 1995 | 1964-1969, Plus | Lester Flatt & Earl Scruggs | | 1 |
| 1997 | On Foggy Mountain | Lester Flatt & Earl Scruggs | | 1 |
| 1997 | The Essential Flatt & Scruggs: 'Tis Sweet to Be Remembered... | Lester Flatt & Earl Scruggs | | 1 |
| 2000 | Hard Travelin' / Final Fling | Lester Flatt & Earl Scruggs | | 1 |
| 2000 | Inducted Into the Hall of Fame 1985 | Flatt & Scruggs | | 1 |
| 2001 | 20th Century Masters: The Millennium Collection: The Best of Flatt & Scruggs | Lester Flatt & Earl Scruggs | | 1 |
| 2001 | Foggy Mountain Breakdown | Lester Flatt & Earl Scruggs | | 1 |
| 2002 | 16 Biggest Hits | Lester Flatt & Earl Scruggs | | 1 |
| 2002 | Father’s Table Grace | Flatt & Scruggs | | 1 |
| 2003 | The Complete Mercury Recordings | Lester Flatt & Earl Scruggs | | 1 |
| 2003 | Winning Combinations | Lester Flatt & Earl Scruggs and Bill Monroe | | 1 |
| 2003 | Foggy Mountain Special | Lester Flatt & Earl Scruggs & The Foggy Mountain Boys | | 1 |
| 2004 | Selected Sides: 1947–1953 | Lester Flatt & Earl Scruggs / The Stanley Brothers | | 1 |
| 2004 | A Proper Introduction to Lester Flatt & Earl Scruggs: The Mercury Years | Lester Flatt & Earl Scruggs | | 1 |
| 2005 | Foggy Mountain Gospel | Lester Flatt & Earl Scruggs | | 1 |
| 2006 | Mountain Breakdown | Lester Flatt & Earl Scruggs | | 2 |
| 2010 | Volume 2 1952–1959 | Flatt & Scruggs, The Stanley Brothers | | 1 |
| 2011 | Classic Collection | Lester Flatt & Earl Scruggs | | 1 |
| — | Kings of Bluegrass, Vol. 2: Early ’50’s Radio Broadcasts | Lester Flatt & Earl Scruggs | | 1 |
| — | Seven Classic Albums | Flatt & Scruggs | | 1 |
