| 1988 | Il Trionfo del Tempo e del Dissinganno | Handel; Marc Minkowski, Les Musiciens du Louvre, I. Poulenard, J. Smith, N. Stutzmann, J. Elwes | | 1 |
| 1989 | Leçons De Ténèbres | Michel Lambert, Charles Brett, Howard Crook, Noémi Rime, Nathalie Stutzmann, Philippe Foulon, Mauricio Buraglia & Ivète Piveteau | | 1 |
| 1990 | Concertos / Stabat Mater | Vivaldi; Vladimir Spivakov, Nathalie Stutzmann, Moscow Virtuosi | | 2 |
| 1991 | Lieder | Mendelssohn; Nathalie Stutzmann, Dalton Baldwin | | 1 |
| 1992 | Dichterliebe / Frauenliebe und-leben | Robert Schumann; Nathalie Stutzmann, Catherine Collard | | 1 |
| 1992 | Johannes-Passion | Johann Sebastian Bach; Enoch zu Guttenberg, Chorgemeinschaft Neubeuern, Bach‐Collegium München, Inga Nielsen, Nathalie Stutzmann, Claes‐Håkan Ahnsjö, Robert Swensen, Anton Scharinger, Thomas Quasthoff | | 1 |
| 1992 | Opera Arias | Handel; Nathalie Stutzmann, The Hanover Band, Roy Goodman | | 1 |
| 1992 | Peace on Earth: A Bavarian Christmas | James Galway, Michala Petri, Nathalie Stutzmann, Guy Touvron, Francisco Araiza, Enoch zu Guttenberg | | 1 |
| 1993 | Stabat Mater / Salve Regina | Pergolesi; Nathalie Stutzmann, Elizabeth Norberg-Schulz, The Hanover Band, Roy Goodman | | 1 |
| 1993 | Mélodies | Fauré; Nathalie Stutzmann, Catherine Collard | | 1 |
| 1994 | The Orchestral Songs, Volume 1 | Shostakovich; Luba Orgonasova, Nathalie Stutzmann, Larissa Dyadkova, Philip Langridge, Sergei Leiferkus, Gothenburg Symphony Orchestra, Neeme Järvi | | 1 |
| 1995 | Requiem in D minor / Ave verum corpus | Mozart; Panzarella, Stutzmann, Prégardien, Berg, Les Arts Florissants, William Christie | 5 | 1 |
| 1996 | Lieder Vol. IV | Schumann; Nathalie Stutzmann, Inger Södergren | | 1 |
| 1996 | Cantatas Nos. 54 / 82 / 170 | Johann Sebastian Bach; Nathalie Stutzmann, The Hanover Band, Roy Goodman | | 1 |
| 2001 | Sacred Music, Vol. 7 | Vivaldi; Susan Gritton, Carolyn Sampson, Nathalie Stutzmann, Charles Daniels, Choir of the King’s Consort, The King’s Consort, Robert King | | 1 |
| 2002 | Sacred Music, Vol. 8 | Vivaldi; Susan Gritton, Tuva Semmingsen, Nathalie Stutzmann, The King’s Consort, Robert King | | 1 |
| 2003 | La verità in cimento | Vivaldi; Ensemble Matheus, Jean‐Christophe Spinosi, Bertagnolli, Laurens, Mingardo, Stutzmann, Jaroussky, Rolfe Johnson | | 2 |
| 2007 | Atenaide | Vivaldi; Modo Antiquo, Federico Maria Sardelli, Sandrine Piau, Vivica Genaux, Guillemette Laurens, Romina Basso, Nathalie Stutzmann, Paul Agnew, Stefano Ferrari | | 2 |
| 2008 | Schwanengesang | Franz Schubert; Inger Södergren, Nathalie Stutzmann | | 1 |
| 2011 | Matthäus Passion: Berühmte Chöre und Arien | Johann Sebastian Bach; Oelze, Stutzmann, Ainsley, Thomas Quasthoff, Saito Kinen Orchestra, Seiji Ozawa | | 1 |
| 2012 | Une cantate imaginaire | Bach; Nathalie Stutzmann, Orfeo 55 | | 1 |
| 2013 | Mélodies | Ravel, Debussy; Nathalie Stutzmann, Catherine Collard | | 1 |
| 2014 | Heroes From the Shadows | Handel; Nathalie Stutzmann, Orfeo 55 | | 1 |
| 2014 | Winterreise / Die schöne Müllerin / Schwanengesang | Schubert; Nathalie Stutzmann, Inger Södergren | | 1 |
| 2015 | Mélodies françaises | Fauré, Chausson, Ravel, Debussy, Poulenc; Nathalie Stutzmann | | 1 |
| 2017 | Quella Fiamma: Arie Antiche | Nathalie Stutzmann, Orfeo 55 | | 1 |
| 2017 | Quella Fiamma: Arie Antiche | Nathalie Stutzmann | | 1 |
| 2021 | Contralto | Nathalie Stutzmann, Orfeo 55 | | 1 |
| 2021 | Symphony No. 3 D minor | Gustav Mahler, Symphonieorchester des Bayerischen Rundfunks, Mariss Jansons, Nathalie Stutzmann & Tölzer Knabenchor | | 1 |
| — | 2 Sonates op. 120 pour alto & piano / 2 Gesänge op. 91 pour voix d'alto, alto & piano | Brahms; Gérard Caussé, Nathalie Stutzmann, François‐René Duchâble | | 1 |
| — | Evocations / Résurrection | Roussel; José van Dam, Nicolaï Gedda, Nathalie Stutzmann, Orfeón Donostiarra, Orchestre national du Capitole de Toulouse, Michel Plasson | | 1 |
