| 1989 | Claviermusik der Bach-Schüler | Agricola, Goldberg, Krebs, J.E. Bach, Altnikol, Müthel; Gregor Hollmann | | 1 |
| 1990 | Great European Organs, No. 24: Dietrich Wagler Plays the Silbermann Organ of Freiberg Dom | Scheidt, Clérambault, Buxtehude, Krebs, Bach; Dietrich Wagler | | 1 |
| 1990 | St. Stephanuskerk, Hasselt | J.S. Bach, Krebs, C. Ph. E. Bach, Brahms, Mendelssohn, Reger; Wouter van den Broek | | 1 |
| 1991 | Chorales & Fantasias | J. L. Krebs; Peter Hurford | | 1 |
| 1992 | Musik für Orgel & Trompete | Clarke, Bach, Homilius, Krebs, Lübeck, Telemann, Torelli; Wolfgang Portugall, Egbert Lewark | | 2 |
| 1995 | Die Stumm-Orgel der Pfarrkirche St. Margaretha, Heimbash-Weis | Jean‐François Dandrieu, Johann Ludwig Krebs, Giovanni Battista Martini, Johann Gottfried Walther | | 1 |
| 1997 | „a duoi cembali“ – Musique allemande pour deux clavecins | Mattheson, Schaffrath, W.F. Bach, Krebs; Attilio Cremonesi, Alessandro de Marchi | | 1 |
| 1998 | Complete Works for Organ, Volume 1 | Johann Ludwig Krebs; Felix Friedrich | | 1 |
| 1998 | Complete Works for Organ, Volume 2 | Johann Ludwig Krebs; Felix Friedrich | | 1 |
| 1998 | Die großen Choralvorspiele | Johann Ludwig Krebs; Gerhard Weinberger | | 1 |
| 1999 | Complete Works for Organ, Volume 3 | Johann Ludwig Krebs; Felix Friedrich,Norbert Kaschel | | 1 |
| 1999 | Complete Works for Organ, Volume 4 | Johann Ludwig Krebs;Felix Friedrich | | 1 |
| 2000 | Complete Works for Organ, Volume 5 | Johann Ludwig Krebs; Susanne Scheinpflug, Irmtraut Friedrich, Felix Friedrich | | 1 |
| 2000 | Complete Works for Organ, Volume 6 | Johann Ludwig Krebs; Johanna Baumgärtel, Felix Friedrich | | 1 |
| 2000 | ClavierÜbung & Complete works for organ and instrument obbligato | Johann Ludwig Krebs; Laurence Dean, Hans-Peter Westermann, Ute Hartwich, Wilhelm Bruns, Franz Raml | | 1 |
| 2000 | Guitar Concertos | Antonio Vivaldi, Johann Ludwig Krebs, Johann Friedrich Fasch | | 1 |
| 2000 | Organ Works Volume 1 | Johann Ludwig Krebs; Gerhard Gnann | | 1 |
| 2001 | Complete Works for Organ, Volume 7 | Johann Ludwig Krebs; Christine Schornsheim, Felix Friedrich, Kammerchor Michaelstein & Sebastian Göring | | 1 |
| 2001 | Complete Works for Organ, Volume 8 | Johann Ludwig Krebs; Robert Vanryne, Felix Friedrich | | 1 |
| 2002 | Complete Works for Organ, Volume 9 | Johann Ludwig Krebs; Felix Friedrich, Kammerchor Michaelstein & Sebastian Göring | | 1 |
| 2002 | Complete Works for Organ, Volume 10 | Johann Ludwig Krebs; Felix Friedrich | | 1 |
| 2004 | Oboenkonzerte (Oboe Concertos) Graun / Krebs / Telemann | Johann Gottlieb Graun, Johann Ludwig Krebs, Georg Philipp Telemann; Camerata Bern, Heinz Holliger | | 1 |
| 2015 | Bach / Krebs / Abel | Bach, Krebs, Abel; Helen Callus, Luc Beauséjour | | 1 |
| — | Grote Kerk Leeuwarden | J.S. Bach, Krebs, Oley, Homilius, Mendelssohn; Jan Jongepier | | 1 |
