| 1973 | Michael Murray Playing the Organ at Grace Cathedral, San Francisco | Lemmens, Vierne, Dupré, Widor; Michael Murray | | 1 |
| 1980 | Symphony no. 3 "Organ" | Saint‐Saëns; The Philadelphia Orchestra, Eugene Ormandy, Michael Murray | | 2 |
| 1980 | Symphony no. 3 in C Minor, op. 78 “Organ” | Camille Saint‐Saëns; Michael Murray, Philadelphia Orchestra & Eugene Ormandy | | 1 |
| 1982 | Encores a la francaise / Concerto for Organ | Poulenc; Michael Murray, Robert Shaw, Atlanta Symphony Orchestra | | 1 |
| 1982 | Encores à la Française (The Organ at Symphony Hall, Boston) | Michael Murray | | 1 |
| 1983 | The Organs at First Congregational Church, Los Angeles | Johann Sebastian Bach; Michael Murray | | 2 |
| 1984 | The Ruffatti Organ in Davies Symphony Hall | Johann Sebastian Bach, Olivier Messiaen, Marcel Dupré, Charles‐Marie Widor, César Franck; Michael Murray | 3 | 1 |
| 1986 | Bach In Hildesheim | Johann Sebastian Bach; Michael Murray | | 1 |
| 1986 | Dupré: Symphony in G minor / Rheinberger: Organ Concerto no. 1 in F | Dupré, Rheinberger; Royal Philharmonic Orchestra, Jahja Ling, Michael Murray | | 1 |
| 1988 | The Great Organ at the Cathedral of St. John the Divine | Michael Murray | 2 | 1 |
| 1990 | The Young Bach - The Gabriel Kney Organ At The College Of St. Thomas, St. Paul, Minnesota | Johann Sebastian Bach; Michael Murray | | 1 |
| 1990 | Music for Organ, Brass & Percussion | Empire Brass, Michael Murray | | 1 |
| 1990 | The Great Organ at Methuen | Johann Sebastian Bach; Michael Murray | | 3 |
| 1990 | The Complete Masterworks for Organ | César Franck; Michael Murray | | 1 |
| 1992 | Bach at St. Bavo's | Bach - Michael Murray | | 1 |
| 1993 | Ceremonial Music for Trumpet and Symphonic Organ | Rolf Smedvig, Michael Murray | | 2 |
| 1993 | Symphony no. 1 / Symphony no. 3 | Louis Vierne; Michael Murray | | 1 |
| 1995 | Bach Organ Blaster | Johann Sebastian Bach; Michael Murray | | 1 |
| 1996 | Bach at Zwolle | Johann Sebastian Bach; Michael Murray | | 1 |
| 2004 | Organ Music of Johann Sebastian Bach and César Franck | Johann Sebastian Bach, César Franck; Michael Murray | | 1 |
| — | Symphony no. 3 «Organ» / Phaéton | Saint‐Saëns; Michael Murray, Royal Philharmonic Orchestra, Christian Badea | | 1 |
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