| 1978 | Protocol | Henry Kaiser | | 1 |
| 1980 | Outside Pleasure | Henry Kaiser | | 1 |
| 1981 | Aloha | Henry Kaiser | | 2 |
| 1981 | Metalanguage Festival of Improvised Music 1980, Volume 1: The Social Set | Greg Goodman, Henry Kaiser, Toshinori Kondo, Evan Parker, Rova Saxophone Quartet | | 3 |
| 1981 | Metalanguage Festival of Improvised Music 1980, Volume 2: The Science Set | Derek Bailey, Evan Parker, Henry Kaiser, Larry Ochs, Jon Raskin, Greg Goodman, Toshinori Kondo, Andrew Voigt | | 2 |
| 1983 | Who Needs Enemies? | Henry Kaiser and Fred Frith | | 1 |
| 1984 | It's a Wonderful Life | Henry Kaiser | | 2 |
| 1984 | Invite The Spirit | Henry Kaiser / Charles K. Noyes / Sang-Won Park | | 1 |
| 1986 | Marrying for Money | Henry Kaiser | | 2 |
| 1987 | Devil in the Drain | Henry Kaiser | | 2 |
| 1987 | With Enemies Like These, Who Needs Friends? | Fred Frith & Henry Kaiser | | 1 |
| 1988 | Alternative Versions | Henry Kaiser | | 1 |
| 1988 | Those Who Know History Are Doomed to Repeat It | Henry Kaiser | | 2 |
| 1989 | Popular Science | Kaiser & Kuriokhin | | 2 |
| 1991 | Hope You Like Our New Direction | Henry Kaiser | | 2 |
| 1991 | Tomorrow Knows Where You Live | Henry Kaiser & Jim O’Rourke | | 1 |
| 1992 | A World out of Time: Henry Kaiser & David Lindley in Madagascar | Henry Kaiser & David Lindley | | 1 |
| 1993 | A World out of Time, Vol. 2: Henry Kaiser & David Lindley in Madagascar | Henry Kaiser & David Lindley | | 1 |
| 1993 | Wireforks | Derek Bailey & Henry Kaiser | | 1 |
| 1993 | The Five Heavenly Truths | Henry Kaiser | | 1 |
| 1994 | Acoustics | Henry Kaiser, Mari Kimura, Jim O’Rourke, John Oswald | | 1 |
| 1994 | The Sweet Sunny North | Henry Kaiser & David Lindley | | 2 |
| 1995 | Eternity Blue | Henry Kaiser | | 1 |
| 1996 | The Sweet Sunny North, Volume 2 | Henry Kaiser & David Lindley | | 1 |
| 1997 | Giorni felici | La 1919 featuring Franco Fabbri, Henry Kaiser, John Oswald, Fausto Rossi | | 2 |
| 1998 | Yo, Miles! | Henry Kaiser & Wadada Leo Smith | | 1 |
| 1999 | Friends & Enemies | Fred Frith & Henry Kaiser | | 1 |
| 1999 | Guitar Lesson | Eugene Chadbourne & Henry Kaiser | | 1 |
| 1999 | Passwords | Henry Kaiser & Paul Plimley With Danielle DeGruttola | | 1 |
| 1999 | Through | Henry Kaiser & Roberto Zorzi | | 1 |
| 2003 | Guitar Party | Henry Kaiser & Glenn Phillips | | 1 |
| 2004 | Sky Garden | Yo Miles!: Henry Kaiser& Wadada Leo Smith | | 1 |
| 2004 | Yo Miles! Sky Garden | Henry Kaiser & Wadada Leo Smith | | 1 |
| 2005 | Upriver | Yo Miles!: Henry Kaiser & Wadada Leo Smith | | 2 |
| 2006 | Invite The Spirit 2006 | Henry Kaiser • Charles K. Noyes • Song Won Park | | 1 |
| 2006 | Sextessense: A Tribute to John Stevens and the SME | Aaron Bennet, Jerome Bryerton, John Butcher, Danielle DeGruttola, Henry Kaiser & Damon Smith | | 2 |
| 2007 | Night Sky Day Dream | Henry Kaiser & Knut Reiersrud | | 1 |
| 2007 | Healing Force - The Songs of Albert Ayler | Vinny Golia, Aurora Josephson, Henry Kaiser, Mike Keneally, Joe Morris, Damon Smith, Weasel Walter | | 1 |
| 2009 | Where Endless Meets Disappearing | Henry Kaiser | | 1 |
| 2010 | YO MILES! Shinjuku | Henry Kaiser & Wadada Leo Smith | | 1 |
| 2010 | YO MILES! Lightning | Henry Kaiser & Wadada Leo Smith | | 1 |
| 2011 | Ninja Star Danger Rock | Henry Kaiser, Charles K. Noyes, Weasel Walter | | 1 |
| 2012 | Jazz Free | Nels Cline, Henry Kaiser, Weasel Walter, Jim Thomas, Allen Whitman | | 1 |
| 2012 | The Starbreak Splatterlight | Henry Kaiser, Paul Plimley, Weasel Walter, Lukas Ligeti | | 1 |
| 2013 | Requia and Other Improvisations for Guitar Solo | Henry Kaiser | | 2 |
| 2013 | Encounters at the End of the World | Henry Kaiser & David Lindley | | 1 |
| 2015 | The Celestial Squid | Henry Kaiser & Ray Russell | | 1 |
| 2015 | Plane Crash 2 | Henry Kaiser / Damon Smith / Weasel Walter | | 1 |
| 2015 | Plane Crash Two | Henry Kaiser / Damon Smith / Weasel Walter | | 1 |
| 2016 | Igneity: After the Fall of Civilization | Weasel Walter Large Ensemble featuring Henry Kaiser | | 1 |
| 2017 | Together Apart | Ian Brighton, Henry Kaiser | | 1 |
| 2018 | Mudang Rock 巫堂樂 | Rudresh Mahanthappa, Henry Kaiser, Bill Laswell & Rudresh Mahanthappa | | 1 |
| 2018 | En Las Montañas de Excesos | Chris Cogburn, Ingebrigt Håker Flaten, Henry Kaiser, Bob Hoffnar | | 1 |
| 2019 | Unexpected Twins | Bruce Ackley, Fred Frith, Henry Kaiser, Aram Shelton | | 1 |
| 2019 | Wind Crystals: Guitar Duets By Wadada Leo Smith | Eugene Chadbourne, Henry Kaiser | | 1 |
| 2019 | More Requia | Henry Kaiser | | 1 |
| 2020 | A Love Supreme Electric: A Love Supreme and Meditations | Vinny Golia, John Hanrahan, Henry Kaiser, Wayne Peet, Mike Watt | | 1 |
| 2020 | In the Arctic Dreamtime | Ivar Grydeland & Henry Kaiser | | 1 |
| 2021 | Be Here Whenever | Danielle DeGruttola, Henry Kaiser, Benedicte Maurseth, Stein Urheim | | 1 |
| 2021 | At One Time | Henry Kaiser, John Oswald & Paul Plimley | | 1 |
| 2022 | Pacifica Koral Reef | Wadada Leo Smith, Henry Kaiser, Alex Varty | | 1 |
| 2022 | The Lenoir Investigation | Henry Kaiser, Rome Yamilov | | 1 |
| — | Five Times Surprise | Henry Kaiser | | 1 |
| — | Nostalgia for Infinity | Henry Kaiser | | 1 |
| — | Outside Aloha Pleasure | Henry Kaiser | | 1 |
