| 1982 | Miri It Is: English Medieval Music From the 13th and 14th Centuries | Philip Astle & Paul Williamson and their Noyse of Musitians with Paul Hillier | | 1 |
| 1988 | Music from the time of Christian IV – Church Music at Court & in Town | The Hilliard Ensemble, Paul Hillier | | 1 |
| 1989 | Proensa | Paul Hillier, Stephen Stubbs, Andrew Lawrence‐King, Erin Headley | | 1 |
| 1989 | Vespers / Ave verum corpus | Mozart; The Hilliard Ensemble, Lynne Dawson, David James, Rogers Covey‐Crump, Paul Hillier, King’s College Choir Cambridge, Cambridge Classical Players & Stephen Cleobury | | 1 |
| 1991 | Troubadour Songs and Medieval Lyrics | Paul Hillier, Stephen Stubbs, Lena-Liis Kiesel | | 1 |
| 1992 | Early American Choral Music, Volume 1 | William Billings; His Majestie's Clerkes, Paul Hillier | | 2 |
| 1992 | Der Schwanengesang | Heinrich Schütz; The Tapiola Chamber Choir, Paul Hillier | | 1 |
| 1992 | Litany for the Whale | John Cage; Theatre of Voices, Paul Hillier | | 3 |
| 1994 | Motets and Mass for Four Voices | William Byrd; Theatre of Voices, Paul Hillier | | 2 |
| 1994 | Carols From the Old & New Worlds | Theatre of Voices, Paul Hillier | | 1 |
| 1994 | St. Matthew Passion / Visitatio / Exsultet | Lassus; Theatre of Voices, Paul Hillier, Paul Elliott | | 1 |
| 1995 | Lamentations, Motets, String Music | Thomas Tallis; Theatre of Voices, Paul Hillier, The King’s Noyse, David Douglass | | 1 |
| 1996 | The Age of Cathedrals: Music from the Magnus Liber Organi | Alan Bennett, Paul Elliott, Theatre of Voices, Paul Hillier | | 3 |
| 1996 | De Profundis | Arvo Pärt; Theatre of Voices, Paul Hillier | | 3 |
| 1996 | Goostly Psalmes: Anglo-American Psalmody 1550–1800 | His Majestie's Clerkes, Paul Hillier | | 1 |
| 1997 | Chansons De Trouvères | Paul Hillier & Andrew Lawrence‐King | | 1 |
| 1997 | Portrait | Paul Hillier | | 1 |
| 1998 | Bitter Ballads | Paul Hillier | | 1 |
| 1999 | Missa de la mapa mundi / Secular Music of 15th Century Spain | Johannes Cornago; soloists and members of His Majestie's Clerkes, Paul Hillier, The Newberry Consort, Mary Springfels | | 1 |
| 2000 | I Am the True Vine | Arvo Pärt; Theatre of Voices, The Pro Arte Singers, Paul Hillier | | 1 |
| 2000 | Distant Love | Paul Hillier & Andrew Lawrence‐King | | 1 |
| 2001 | Psalmi Davidis Pœnitentiales | Orlande de Lassus; The Hilliard Ensemble, Kees Boeke Consort, Paul Hillier | | 1 |
| 2002 | Baltic Voices 1 | The Estonian Philharmonic Chamber Choir, Paul Hillier | | 2 |
| 2002 | Poeticall Musicke | Tobias Hume; Figueras, Hillier, Hespèrion XX, Jordi Savall | | 1 |
| 2003 | Orthodox Chant | Paul Hillier & Estonian Philharmonic Chamber Choir | | 1 |
| 2003 | The Powers of Heaven | Estonian Philharmonic Chamber Choir, Paul Hillier | | 2 |
| 2004 | Baltic Voices 2 | Estonian Philharmonic Chamber Choir, Paul Hillier | | 1 |
| 2005 | All-Night Vigil | Sergey Rachmaninov; Estonian Philharmonic Chamber Choir, Paul Hillier | | 4 |
| 2005 | Baltic Voices 3 | Estonian Philharmonic Chamber Choir, Paul Hillier | | 1 |
| 2006 | Da Pacem | Arvo Pärt; Estonian Philharmonic Chamber Choir, Paul Hillier | | 2 |
| 2006 | Taverner & Tudor Church Music I: The Western Wind | Ars Nova Copenhagen, Paul Hillier | | 1 |
| 2006 | A New Joy: Orthodox Christmas | Estonian Philharmonic Chamber Choir, Paul Hillier | | 3 |
| 2006 | In C | Terry Riley; Ars Nova Copenhagen, Percurama Percussion Ensemble, Paul Hillier | | 1 |
| 2006 | Monastic Song: 12th Century Monophonic Chant | Pierre Abélard & Paul Hillier | | 1 |
| 2007 | Stimmung | Karlheinz Stockhausen; Theatre of Voices, Paul Hillier | | 1 |
| 2008 | Songs | Toivo Tulev; Estonian Philharmonic Chamber Choir, Robin Blaze, Paul Hillier | | 1 |
| 2008 | Kronos Plays Holmgreen | Pelle Gudmundsen-Holmgreen; Kronos Quartet, Paul Hillier, Danish National Symphony Orchestra / DR, Thomas Dausgaard | | 1 |
| 2008 | Scattered Rhymes | Tarik O’Regan, Guillaume de Machaut, Gavin Bryars; Orlando Consort, Estonian Philharmonic Chamber Choir, Paul Hillier | | 1 |
| 2009 | The Little Match Girl Passion | David Lang; Theatre of Voices, Ars Nova Copenhagen, Paul Hillier | | 1 |
| 2009 | Das Berliner Requiem | Kurt Weill, Hindemith, Stravinsky, Milhaud; I Solisti del Vento, Flemish Radio Choir, Paul Hillier | | 1 |
| 2010 | Complete Narrative Works | Heinrich Schütz; Ars Nova Copenhagen, Paul Hillier | | 2 |
| 2010 | Scandinavian Cantatas | Dietrich Buxtehude; Theatre of Voices, Paul Hillier | | 2 |
| 2010 | The Natural World of Pelle Gudmundsen-Holmgreen | Pelle Gudmundsen-Holmgreen; Ars Nova Copenhagen, Paul Hillier | | 1 |
| 2010 | Baltic Runes | Tormis, Sibelius, Kreek, Bergman; Estonian Philharmonic Chamber Choir, Paul Hillier | | 1 |
| 2011 | The Christmas Story | Theatre of Voices, Ars Nova Copenhagen, Paul Hillier | | 2 |
| 2011 | Acallam na Senórach: An Irish Colloquy | Tarik O’Regan; National Chamber Choir of Ireland, Paul Hillier | | 1 |
| 2011 | A Bridge of Dreams | Ars Nova Copenhagen, Paul Hillier, Andrew Lawrence‐King | | 1 |
| 2011 | Stories | Theatre of Voices, Paul Hillier | | 1 |
| 2012 | Sorensen & Ockeghem: Requiem | Sørensen & Ockeghem; Ars Nova Copenhagen, Paul Hillier | | 1 |
| 2012 | Creator Spiritus | Arvo Pärt; Theatre of Voices, Ars Nova Copenhagen, Paul Hillier, Christopher Bowers-Broadbent, NYYD Quartet | | 1 |
| 2012 | One Day Fine | National Chamber Choir of Ireland, Paul Hillier | | 1 |
| 2012 | Choirland | National Chamber Choir of Ireland, Paul Hillier | | 1 |
| 2013 | Monastic Chant | Theatre of Voices, Paul Hillier | | 1 |
| 2014 | The Golden Age of Danish Partsongs | Ars Nova Copenhagen, Paul Hillier | | 1 |
| 2016 | Nature morte | Galina Grigorjeva; Estonian Philarmonic Chamber Choir, Theatre of Voices, Yxus Quartet, Conrad Steinmann, Paul Hillier | | 2 |
| 2016 | Snowbells: Works for choir | Bent Sørensen; Danish National Vocal Ensemble, Paul Hillier | | 1 |
| 2016 | Green Ground | Pelle Gudmundsen-Holmgreen; Kronos Quartet, Theatre of Voices, Paul Hillier | | 1 |
| 2016 | Voices from Ancient Abbeys: Plainchant & Polyphony | Ensemble Organum and Marcel Pérès, Deller Consort and Alfred Deller,Paul Hillier and Theatre of Voices, Anonymous 4 | | 1 |
| 2017 | In Dulci Jubilo: Music for the Christmas season by Buxtehude and friends | Theatre of Voices, Paul Hillier | | 1 |
| 2017 | Crossing Borders | Ars Nova Copenhagen, Paul Hillier | | 1 |
| 2020 | ... and ... | Arvo Pärt, Julia Wolfe, Caroline Shaw, Anon (Italy); Ars Nova Copenhagen, Paul Hillier | | 1 |
| 2022 | Drone Mass | Theatre of Voices, Paul Hillier, American Contemporary Music Ensemble & Jóhann Jóhannsson | | 2 |
| 2023 | Folks' Music | Linda Catlin Smith, Cassandra Miller, Laurence Crane; Chamber Choir Ireland, Paul Hillier, Esposito Quartet | | 2 |
| 2024 | Canções portuguesas | Fernando Lopes-Graça; Coro Casa da Música, Paul Hillier | | 1 |
| 2025 | Book of Mountains and Seas | Huang Ruo; Ars Nova Copenhagen, Gert Mortensen, Hsiao-Tung Yuan, Michael Murphy, Paul Hillier | | 1 |
| — | Cantigas from the Court of Dom Dinis | Theatre of Voices & Paul Hillier | | 1 |
| — | Hoquetus | Theatre of Voices, Paul Hillier | | 1 |
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