| 1978 | Solflöjt 2 | Vivaldi, Bach, Mozart, Grieg, Sommerfeldt, Rachmaninov, von Koch; Gunilla von Bahr, The Stockholm Chamber Ensemble, Jan‐Olav Wedin, Hans Fagius | | 1 |
| 1982 | Hans Fagius plays The Romantic Swedish Organ | Emil Sjögren, Harald Fryklöf, Otto Olsson, Oskar Lindberg; Hans Fagius | | 2 |
| 1986 | The Complete Organ Music, Volume 1: 18 Choräle / Schübler-Choräle | Johann Sebastian Bach; Hans Fagius | | 1 |
| 1986 | The Complete Organ Music, Volume 2 | Johann Sebastian Bach; Hans Fagius | | 1 |
| 1987 | Organ Favourites | Hans Fagius | | 1 |
| 1987 | The Complete Organ Music, Volume 4: Preludes And Fugues / Toccata In C / Trio Sonata In C / Concerto In A / Partita: O Gott, Du Frommer Gott / Chorales From The Kirnberger Collection | Johann Sebastian Bach / Hans Fagius | | 1 |
| 1988 | The Complete Organ Music, Volume 5 | Johann Sebastian Bach; Hans Fagius | | 1 |
| 1989 | The Complete Organ Music, Volume 6 | Johann Sebastian Bach; Hans Fagius | | 1 |
| 1990 | The Complete Organ Music, Volume 7 | Johann Sebastian Bach; Hans Fagius | | 1 |
| 1990 | Symphony no. 3 in E minor / Symphony no. 6 in G minor / Méditation and Marche Pontificale from Symphony no. 1 in C minor | Charles‐Marie Widor; Hans Fagius | | 1 |
| 1991 | The Complete Organ Music | Zoltán Kodály; Hans Fagius | | 1 |
| 1992 | Fantasies in E-flat major, D-flat major & C major / Bénédiction nuptiale / The Preludes and Fugues | Camille Saint‐Saëns; Hans Fagius | | 1 |
| 1993 | Christmas Music | Malmö Chamber Choir, Dan-Olof Stenlund, Hans Fagius | | 1 |
| 1994 | The Organ of Harnosand Cathedral, Sweden | Hans Fagius | | 1 |
| 1995 | Hans Fagius plays French Organ Music | Couperin, Alain, Duruflé, Saint‐Saëns, Boëllmann, d'Aquin, Dupré; Hans Fagius | | 1 |
| 1999 | Organ Symphonies no. 2 & no. 8 | Charles‐Marie Widor; Hans Fagius | | 1 |
| 2000 | Die Kunst der Fuge | Johann Sebastian Bach; Hans Fagius | | 1 |
| 2001 | Pastels & Impressions | Sigfrid Karg-Elert; Hans Fagius | | 1 |
| 2005 | Works for Organ | J.P.E. Hartmann, Niels W. Gade; Hans Fagius | | 1 |
| 2010 | Johann Sebastian Bachs Orgelverk | Johann Sebastian Bach; Hans Fagius | | 1 |
| 2013 | The French Organ Symphony | Hans Fagius | | 1 |
