| 1969 | Oboensonaten | Bach, Händel, Antonio Vivaldi; Heinz Holliger | | 2 |
| 1981 | 4 Concerti, op. 9 | Tomaso Albinoni; I Musici, Heinz Holliger | | 1 |
| 1981 | Concerti per oboe | Telemann; Heinz Holliger, Academy of St Martin in the Fields, Iona Brown | | 2 |
| 1982 | Oboe Concertos | Ludwig August Lebrun; Heinz Holliger, Camerata Bern, Thomas Füri | | 2 |
| 1983 | 3 Oboe Concertos | Academy of St Martin in the Fields, Iona Brown, Heinz Holliger | | 1 |
| 1983 | Brandenburg Concertos nos. 1, 2 & 3 | Johann Sebastian Bach; Henryk Szeryng, Heinz Holliger, Carl Pini, Michala Petri, Academy of St Martin in the Fields, Sir Neville Marriner | | 1 |
| 1984 | 5 Concerti Per Oboe / Concerto Per Oboe & Fagotto RV 545 | Vivaldi; I Musici, Heinz Holliger, Klaus Thunemann | | 1 |
| 1984 | Bach: Concerto in C minor, BWV 1060 / Vivaldi: Concerti RV 576 & 582 | Bach, Vivaldi; Gidon Kremer, Heinz Holliger, Academy of St Martin in the Fields | | 1 |
| 1984 | Concerti da camera | Vivaldi; Michala Petri, Heinz Holliger, Felix Ayo, Klaus Thunemann, Pasquale Pellegrino, Christiane Jaccottet, Thomas Demenga, Jonathan Rubin | | 1 |
| 1986 | Concertos for Flute and Oboe | Salieri, Cimarosa, Stamitz; Aurèle Nicolet, Heinz Holliger, Academy of St Martin in the Fields, Kenneth Sillito | | 1 |
| 1986 | Mozart: Quintet, K. 452 / Beethoven: Quintet, op. 16 | Mozart, Beethoven; Alfred Brendel, Heinz Holliger, Hermann Baumann, Klaus Thunemann, Eduard Brunner | | 3 |
| 1987 | Cello and Oboe Works | Holliger, Bach; Thomas Demenga, Catrin Demenga, Heinz Holliger | | 1 |
| 1987 | Concerti per Oboe - Oboe Concertos | Heinz Holliger - I Musici; Tomaso Albinoni; Domenico Cimarosa; Alessandro Marcello; Giuseppe Sammartini; Antonio Lotti | | 1 |
| 1987 | Lutoslawski Conducts Lutoslawski: Cello Concerto / Concerto for Oboe and Harp / Danses Préludes | Lutosławski; Heinrich Schiff, Heinz & Ursula Holliger, Eduard Brunner, Symphonie-Orchester des Bayerischen Rundfunks, Lutosławski | | 1 |
| 1988 | Concerti per Oboe, op. 7 | Tomaso Albinoni; Heinz Holliger, Hans Elhorst, Camerata Bern | | 2 |
| 1988 | Concerts Royaux | François Couperin ; Thomas Brandis, Heinz Holliger, Aurèle Nicolet, Josef Ulsamer, Christiane Nicolet, Manfred Sax & Christiane Jaccottet | | 1 |
| 1988 | Harfenkonzerte | Louis Spohr, Wolfgang Amadeus Mozart; Christoph Poppen, Ursula Holliger, Aurèle Nicolet, English Chamber Orchestra, Heinz Holliger | | 1 |
| 1988 | Wind Serenades K.375 & K.388 | Mozart; Holliger, Pellerin, Brunner, Schmidt, Thunemann, Wilkie, Baumann, Vlatkovic | | 1 |
| 1989 | Baroque Oboe Concertos | Leclair, Marcello, Telemann, Vivaldi;Heinz Holliger, Staatskapelle Dresden, Vittorio Negri | | 1 |
| 1989 | Les Goûts-Réunis Ou Nouveaux Concerts | François Couperin; Brandis, Holliger, Nicolet, Ulsamer, Strehl, Sax, Jaccottet | | 2 |
| 1989 | Oboe Sonatas | Vivaldi, Telemann, Handel, C.P.E. Bach; Heinz Holliger, Christiane Jaccottet, Thomas Demenga | | 1 |
| 1989 | The Trio Sonatas | Johann Sebastian Bach; Heinz Holliger, Tabea Zimmermann, Christiane Jaccottet, Thomas Demenga | | 1 |
| 1990 | Heinz Holliger at the Opera | Heinz Holliger | | 1 |
| 1990 | Melodien / Double Concerto / Chamber Concerto | Ligeti; Nicolet, Holliger, London Sinfonietta, David Atherton | 5 | 1 |
| 1990 | Violinkonzerte & Doppelkonzerte | Johann Sebastian Bach; Academy of St Martin in the Fields, Gidon Kremer, Heinz Holliger | | 1 |
| 1990 | Works for Oboe and Piano | Schumann; Heinz Holliger, Alfred Brendel | | 1 |
| 1991 | 12 Concerti, op. 7 | Antonio Vivaldi; I Musici, Salvatore Accardo, Heinz Holliger | | 1 |
| 1992 | 12 Concerti, op. 7 / 2 Sonatas, op. 2 | Albinoni; I Musici, Heinz Holliger, Maurice Bourgue | | 3 |
| 1992 | Violin Concertos | Berg, Janáček, Hartmann; Thomas Zehetmair, Philharmonia Orchestra, Deutsche Kammerphilharmonie, Holliger | | 2 |
| 1993 | Concertos BWV 1041, 1042, 1043, 1060 | J.S. Bach; Gidon Kremer, Heinz Holliger | | 1 |
| 1993 | Scardanelli-Zyklus | Heinz Holliger | | 1 |
| 1994 | The Oboe Concertos | Maderna; Heinz Holliger, Cologne Radio Symphony Orchestra, Gary Bertini | | 1 |
| 1994 | Verklärte Nacht / Kammersymphonie Nr. 2 | Arnold Schönberg; Chamber Orchestra of Europe, Heinz Holliger | | 1 |
| 1994 | Die frühe Wiener Schule | Thomas Demenga, Thomas Füri, Heinz Holliger, Camerata Bern | | 2 |
| 1994 | Metamorphoses | Britten, Mozart; Heinz Holliger | | 1 |
| 1995 | Passacaglia concertante / Songs of the Seasons / Musica concertante | Sándor Veress; Camerata Bern, London Voices, Heinz Holliger | | 1 |
| 1995 | Symphony for Wind Instruments / Suite for 13 Winds, Op. 4 / Serenade, Op. 7 | Richard Strauss; Wind Soloists of the Chamber Orchestra of Europe, Heinz Holliger | | 1 |
| 1995 | Triosonaten | Heinz Holliger, Christiane Jaccottet, 長島義夫, Maurice Bourgue & Klaus Thunemann | | 1 |
| 1996 | The Henze Collection, Doppio concerto / Sonata per Archi / Fantasia für Streicher | Henze; Heinz Holliger, Ursula Holliger, Paul Sacher | | 1 |
| 1997 | Lieder ohne Worte | Heinz Holliger; Thomas Zehetmair, Thomas Larcher, Ursula Holliger | | 1 |
| 1997 | Messiaen: Les Offrandes oubliées / Concert à quatre / Koechlin: Les Bandar-log / Ravel: Boléro | Messiaen, Koechlin, Ravel; Bundesjugendorchester, Heinz Holliger | | 1 |
| 1998 | Berg: Kammerkonzert / Schoenberg: Kammersymphonie | Berg, Schönberg; Thomas Zehetmair, Oleg Maisenberg, Chamber Orchestra of Europe, Heinz Holliger | | 1 |
| 2000 | Schneewittchen (Orchester de Oper Zürich, feat. conductor: Heinz Hollinger, singers: Banse, Kallisch, Davislim, Widmer, Gröschel) | Heinz Holliger | | 1 |
| 2002 | Chamber Symphonies no. 1 & no. 2 / Verklärte Nacht | Schoenberg; Chamber Orchestra of Europe, Heinz Holliger | 5 | 1 |
| 2002 | Elegie | Othmar Schoeck; Christian Gerhaher, Kammerorchester Basel, Heinz Holliger | | 2 |
| 2002 | La course de printemps, op. 95 / Le buisson ardent, op. 203 & 171 | Charles Koechlin; Radio‐Sinfonieorchester Stuttgart des SWR, Heinz Holliger | | 1 |
| 2003 | Concerto for Violoncello and Orchestra / Sonata for Oboe, Harp and Viola | Isang Yun; Siegfried Palm, Heinz Holliger, Hans Zender, Berlin Radio Symphony Orchestra | | 1 |
| 2003 | Lauds and Lamentations: Music of Elliott Carter and Isang Yun | Elliott Carter; Isang Yun, Heinz Holliger, Thomas Zehetmair, Ruth Killius, Thomas Demenga | | 1 |
| 2003 | The Ligeti Project IV: Hamburg Concerto / Double Concerto / Ramifications / Requiem | György Ligeti; Marie Luise Neunecker, Heinz Holliger, Jacques Zoon, Caroline Stein, Margriet van Reisen, London Voices, Terry Edwards, Asko Ensemble, Schönberg Ensemble, Reinbert de Leeuw, Berliner Philharmoniker, Jonathan Nott | | 1 |
| 2004 | Violinkonzert | Heinz Holliger; Thomas Zehetmair, SWR Sinfonieorchester | | 1 |
| 2004 | Oboenkonzerte (Oboe Concertos) Graun / Krebs / Telemann | Johann Gottlieb Graun, Johann Ludwig Krebs, Georg Philipp Telemann; Camerata Bern, Heinz Holliger | | 1 |
| 2005 | Vocal Works With Orchestra | Charles Koechlin; Juliane Banse, SWR Vokalensemble Stuttgart, Radio‐Sinfonieorchester Stuttgart des SWR, Heinz Holliger | | 1 |
| 2006 | Les Heures persanes, op. 65 | Charles Koechlin; Radio‐Sinfonieorchester Stuttgart des SWR, Heinz Holliger | | 1 |
| 2008 | Canto di speranza | Bernd Alois Zimmermann; WDR Sinfonieorchester Köln, Heinz Holliger | | 1 |
| 2009 | Romancendres | Heinz Holliger, Clara Schumann | | 1 |
| 2009 | Les Bandar-log, op. 176 / Offrande musicale sur le nom de BACH, op. 187 | Charles Koechlin; Heinz Holliger, Radio‐Sinfonieorchester Stuttgart des SWR | | 1 |
| 2011 | Concertos and Sinfonias for Oboe / Ich hatte viel Bekümmernis | Johann Sebastian Bach; Heinz Holliger, Erich Höbarth, Camerata Bern | | 3 |
| 2011 | Induuchlen | Heinz Holliger; Sylvia Nopper, Kai Wessel, Olivier Darbellay, Matthias Würsch, Swiss Chamber Soloists | | 1 |
| 2011 | Robert Schumann / Heinz Holliger | Robert Schumann, Heinz Holliger; Alexander Lonquich | | 1 |
| 2011 | Symphonies no. 3 »The Scottish« / no. 4 »The Italian« (2nd version) | Felix Mendelssohn Bartholdy; Musikkollegium Winterthur, Heinz Holliger | | 1 |
| 2012 | Magicien Orchestrateur | Charles Koechlin; Debussy; Fauré; Schubert; Chabrier; Heinz Holliger, Radio‐Sinfonieorchester Stuttgart des SWR | | 1 |
| 2013 | Beethoven / Bruckner / Hartmann / Holiger | Ludwig van Beethoven, Anton Bruckner, Karl Amadeus Hartmann, Heinz Holliger; Zehetmair Quartett | | 1 |
| 2013 | Complete Symphonic Works, Vol. III | Robert Schumann; Oren Shevlin, WDR Sinfonieorchester Köln, Heinz Holliger | | 1 |
| 2013 | Verklärte Nacht, op. 4 / Chamber Symphony no. 2, op. 38 | Schoenberg; Heinz Holliger, Orchestre de Chambre de Lausanne | | 1 |
| 2014 | Aschenmusik | Robert Schumann, Heinz Holliger; Heinz Holliger, Anita Leuzinger, Anton Kernjak | | 1 |
| 2014 | Orchestral Works | Claude Debussy; Dirk Altmann, Daniel Gauthier, Radio-Sinfonieorchester Stuttgart des SWR, Heinz Holliger | | 1 |
| 2015 | Machaut-Transkriptionen | Heinz Holliger, Guillaume de Machaut; Geneviève Strosser, Jürg Dähler, Muriel Cantoreggi, The Hilliard Ensemble | | 1 |
| 2015 | Complete Symphonic Works, Vol. VI | Robert Schumann; WDR Sinfonieorchester Köln, Heinz Holliger | | 1 |
| 2017 | Modern Lied | Holliger, Kurtág, Lachenmann, Lang, Rihm, Sciarrino; Sarah Maria Sun, Jan Philip Schulze | | 1 |
| 2019 | Zwiegespräche | Heinz Holliger, György Kurtág | | 1 |
| 2021 | Schubert: Symphony no. 7 "Unfinished" / Moser: Echoraum zu Franz Schuberts Begräbniß-Feyer | Schubert, Roland Moser; Kammerorchester Basel, Heinz Holliger | | 1 |
| 2021 | Ciaccona | Bach, Gerhard, Holliger, Pauset; Ilya Gringolts | | 1 |
| 2022 | Lunea | Heinz Holliger, Christian Gerhaher | | 1 |
| 2022 | Schönberg: Kammersymphonie, op. 9 / Sechs kleine Stücke, op. 19 / Webern: Symphonie, op. 21 / Fünf Sätze, op. 5 | Schönberg, Webern; Orchestre de Chambre de Lausanne, Heinz Holliger | | 1 |
| 2022 | Recomposed, Vol. 2 | Bernd Alois Zimmermann; Sarah Wegener, Marcus Weiss, Ueli Wiget, WDR Sinfonieorchester, Heinz Holliger | | 1 |
| 2022 | Recomposed, Vol. 3 | Bernd Alois Zimmermann; WDR Sinfonieorchester, Heinz Holliger | | 1 |
| 2022 | Recomposed, Vol. 1 | Bernd Alois Zimmermann; Sarah Wegener, WDR Sinfonieorchester Köln, Heinz Holliger | | 1 |
| 2023 | Lalo: Violin Concertos, Op. 20 & Op. 29. “Concerto Russe” | Dmitry Smirnov, Kammerorchester Basel & Heinz Holliger | | 1 |
| 2023 | Éventail | Heinz Holliger, Anton Kernjak | | 1 |
| — | Bach Oboe Concertos | JS Bach, CPE Bach; Heinz Holliger | | 1 |
| — | Beiseit / Alb-Chehr | Heinz Holliger | | 1 |
| — | Symphonie concertante KV 297 B | Wolfgang Amadeus Mozart, Heinz Holliger, Hermann Baumann & Academy of St Martin in the Fields | | 1 |
