| 1989 | Cathedral Music | Thomas Tomkins; The Choir of St George's Chapel, Windsor Castle, Christopher Robinson, James Judd | | 2 |
| 1990 | English Ayres & Madrigals | Byrd, Morley, Dowland, Wilbye, Weelkes, Tomkins; The Scholars | | 1 |
| 1991 | The Great Service | Tomkins; The Tallis Scholars, Peter Phillips | | 1 |
| 1992 | Englische Virginalmusik | Tomkins, Bull, Byrd, Gibbons, Farnaby; Gustav Leonhardt | | 1 |
| 1994 | Complete Keyboard Music Vol.1 | Thomas Tomkins; Bernhard Klapprott | | 1 |
| 1994 | For Two to Play | Mozart, Handel, J.C. Bach, Tomkins; Davitt Moroney, Olivier Baumont | | 1 |
| 1995 | Consort Music for Viols and Voices / Keyboard Music | Thomas Tomkins | | 2 |
| 1996 | Complete Keyboard Music Vol. 2 | Thomas Tomkins; Bernhard Klapprott | | 1 |
| 1997 | Complete Keyboard Music Vol. 4 | Thomas Tomkins; Bernhard Klapprott | | 1 |
| 1997 | Complete Keyboard Music Vol. 3 | Thomas Tomkins; Bernhard Klapprott | | 1 |
| 1998 | Two Upon a Ground | Simpson, Jenkins, Lawes, Purcell, Tomkins; Charivari Agréable | | 1 |
| 1999 | Choral and Organ Works (Oxford Camerata feat. cond: Jeremy Summerly) | Thomas Tomkins | | 1 |
| 2001 | Barafostus Dreame: Music for Harpsichord and Virginals | Thomas Tomkins; Carole Cerasi | | 1 |
| 2004 | Renaissance Masterpieces | Tallis, Gibbons, Tomkins, Taverner, Byrd, Lassus, Du Caurroy, Palestrina, De Monte | | 1 |
| 2005 | King of Instruments: The Art of Gillian Weir, Vol. 5 | Camilleri, Widor, Vierne, Daquin, Dupré, Tomkins, Sweelinck, Dubois; Gillian Weir | | 1 |
| 2007 | Thomas Tomkins: These Distracted Times | Thomas Tomkins; Fretwork, Alamire, Choir of Sidney Sussex College, Cambridge, David Skinner | | 1 |
| 2011 | Mr Tomkins: His Lessons of Worthe | Byrd, Bull, Tomkins, Tallis; Bertrand Cuiller | | 1 |
| 2013 | Fitzwilliam Virginal Book, Vol. 1 | John Bull, William Byrd, Giles Farnaby, Orlando Gibbons, Thomas Morley, Peter Philips, Thomas Tomkins; Pieter-Jan Belder | | 1 |
| 2013 | English Royal Funeral Music | Purcell, Morley, Tomkins; Vox Luminis, Lionel Meunier | | 1 |
| 2014 | When David Heard: Sacred Choral Works | Thomas Tomkins; Choir of St John’s College, Cambridge, Andrew Nethsingha | | 1 |
| 2016 | Fitzwilliam Virginal Book, Vol. 5 | John Mundy, Ferdinando Richardson, Thomas Tallis, Thomas Morley, Thomas Tomkins, Edmund Hooper; Pieter-Jan Belder | | 1 |
| 2018 | The Passinge Mesures | Bull, Byrd, Farnaby, Gibbons, Inglot, Tomkins; Mahan Esfahani | | 2 |
| 2022 | Elizabethan Organ Music | John Mundy, Giles Farnaby, John Bull, Peter Philips, Orlando Gibbons, Thomas Tomkins, William Byrd & Gustav Leonhardt | | 1 |
