| 1981 | Oboe Quartets | J.C. Bach, Mozart, Stamitz, Wanhal; Ray Still, Itzhak Perlman, Pinchas Zukerman, Lynn Harrell | | 1 |
| 1985 | Concerto in F major for 2 Bassoons & Orchestra / 2 Sinfonias | Jan Křtitel Vaňhal; Annika Wallin, Arne Nilsson, Umeå Sinfonietta, Jukka‐Pekka Saraste | | 1 |
| 1994 | Stabat Mater Symphonie D-Dur | Johann Baptist Vanhal | | 1 |
| 1995 | 5 Symphonies | Johann Baptist Vanhal; Concerto Köln | | 1 |
| 1998 | Symphonies | Johann Baptist Vanhal; London Mozart Players, Matthias Bamert | | 1 |
| 1999 | Symphonies, Vol. 1 | Johann Baptist Vanhal; Nicolaus Esterházy Sinfonia, Uwe Grodd | | 1 |
| 2000 | Double Bass Concertos | Carl Ditters von Dittersdorf, Johann Baptist Vanhal; Chi-Chi Nwanoku, Swedish Chamber Orchestra, Paul Goodwin | | 1 |
| 2000 | Symphonies, Vol. 2 | Johann Baptist Vanhal; City of London Sinfonia, Andrew Watkinson | | 1 |
| 2001 | Missa Pastoralis in G major / Missa Solemnis in C major | Johann Baptist Vanhal | | 1 |
| 2008 | Symphonies, Vol. 4 | Johann Baptist Vanhal; Toronto Chamber Orchestra, Kevin Mallon | | 1 |
| 2009 | Classical Symphonies | François-Joseph Gossec, Johann Baptist Vanhal, Antoine Mahaut, Joseph Martin Kraus; Cappella Coloniensis, Hans-Martin Linde | | 1 |
| 2014 | Johann Baptist Vanhal: Sonatas para Clarinete y Piano | Belén González Domonte, David Ruiz & Johann Baptist Vanhal | | 2 |
| 2014 | Sacred Works | Jan Křtitel Vaňhal; Czech Boys Choir Boni Pueri, Czech Chamber Philharmonic Orchestra, Marek Štryncl | | 1 |
| 2015 | Oboe Quartets & Trio Sonatas | J.C. Bach, C.P.E. Bach, Mozart, Stamitz, Vanhal, Goldberg; Perlman, Zukerman, Still, Harrell, Eddy, Sanders | | 1 |
| 2015 | Vaňhal: Keyboard Capriccios | Michael Tsalka & Johann Baptist Vanhal | | 1 |
| 2017 | Bohemian Rhapsody | Hummel, Neruda, Vanhal, Dvořák; Gábor Boldoczki, PKF Prague Philharmonia | | 1 |
| 2022 | Symphonies, Vol. 5 | Johann Baptist Vaňhal; Czech Chamber Philharmonic Orchestra Pardubice, Michael Halasz | | 1 |
| 2022 | Mozart / Hummel / Vanhal | Mozart, Hummel, Vanhal; Sophie Dervaux, Mozarteum Orchester Salzburg | | 1 |
| — | Stabat Mater / Symphony in G minor | Jan Křtitel Vaňhal; Virtuosi di Praga, Oldřich Vlček | | 1 |
| — | Two Symphonies - Cello Concerto | Johann Baptist Vanhal | | 1 |
