| Changes | R. Carlos Nakai | Cassette | 15 | | Canyon Records | CR-615-C | [none] |
| Changes | R. Carlos Nakai | CD | 15 | | Canyon Records | CR-615 | 729337206151 |
| Journeys | R. Carlos Nakai | CD | 13 | | Canyon Records | CR 613 | |
| Earth Spirit | R. Carlos Nakai | CD | 15 | | Canyon Records | CR-612 | 729337206120 |
| Sundance Season | R. Carlos Nakai | CD | 12 | | Celestial Harmonies | 13024-2 | 013711302424 |
| Carry the Gift | R. Carlos Nakai & William Eaton | CD | 15 | | Canyon Records | CR-7006 | 729337270060 |
| Canyon Trilogy | R. Carlos Nakai | CD | 17 | | Canyon Records | CR-610 | 729337206106 |
| Desert Dance | R. Carlos Nakai | CD | 17 | | Celestial Harmonies | 13033-2 | 013711303322 |
| Winter Dreams | R. Carlos Nakai & William Eaton | CD | 10 | | Canyon Records | CR-7007 | 729337700727 |
| Natives | Peter Kater & R. Carlos Nakai | CD | 8 | | Silver Wave Records | SD-601 | 021585060128 |
| Spirit Horses | James DeMars & R. Carlos Nakai | CD | 5 | | Canyon Records | CR-7014 | 729337701427 |
| Emergence | R. Carlos Nakai | CD | 15 | | Canyon Records | CR-609 | 729337060920 |
| Ancestral Voices | R. Carlos Nakai & William Eaton | CD | 18 | | Canyon Records | CR-7010 | 729337701021 |
| Natives | Peter Kater & R. Carlos Nakai | CD | 8 | | Silver Wave Records | SD-601 | |
| Migration | Peter Kater & R. Carlos Nakai | CD | 12 | | Silver Wave Records | SD704 | 021585070424 |
| Cycles | R. Carlos Nakai | CD | 8 | | Canyon Records | CR-614 | |
| Native Tapestry | James DeMars & R. Carlos Nakai | CD | 6 | | Canyon Records | CR-7015 | 729337701526 |
| How the West Was Lost | Peter Kater with R. Carlos Nakai | CD | 23 | | Silver Wave Records | SD 801 | 021585080126 |
| How the West Was Lost | Peter Kater & R. Carlos Nakai | CD | 23 | | Silver Wave Records | SD 801 | 021585080126 |
| Honorable Sky | Peter Kater & R. Carlos Nakai | CD | 8 | | Silver Wave Records | SD 807 | 021585080720 |
| Island of Bows | R. Carlos Nakai | CD | 7 | | Canyon Records | CR-7018 | 729337701823 |
| Feather, Stone & Light | R. Carlos Nakai / William Eaton / Will Clipman | CD | 18 | | Canyon Records | CR-7011 | |
| How the West Was Lost, Volume Two | Peter Kater & R. Carlos Nakai | CD | 24 | | Silver Wave Records | SD 901 | 021585090125 |
| Improvisations in Concert | Peter Kater & R. Carlos Nakai | CD | 10 | | Silver Wave Records | SD 910 | |
| Inside Canyon de Chelly | Paul Horn & R. Carlos Nakai | CD | 18 | | Canyon Records | CR-7019 | 729337701922 |
| Two World Concerto: The Music of James DeMars | James DeMars, R. Carlos Nakai, Black Lodge Singers & Canyon Symphony Orchestra | CD | 8 | | Canyon Records | CR-7016 | |
| Mythic Dreamer | R. Carlos Nakai | CD | 18 | | Canyon Records | CR-608 | 729337060821 |
| Red Wind | R. Carlos Nakai / William Eaton / Will Clipman | CD | 12 | | Canyon Records | CR-7017 | 729337701724 |
| Winds of Devotion | Nawang Khechog and R. Carlos Nakai | CD | 4 | | EarthSea Records | ESC-1050 | 783707302829 |
| Song for Humanity: Celebration of 10 Years | Peter Kater & R. Carlos Nakai | CD | 13 | | Silver Wave Records | SD 932 | |
| Inside Monument Valley | Paul Horn & R. Carlos Nakai | CD | 20 | | Canyon Records | CR-7020 | 729337702028 |
| Inner Voices | R. Carlos Nakai | CD | 10 | | Canyon Records | cr-7021 | 729337702127 |
| In a Distant Place | R. Carlos Nakai / William Eaton / Will Clipman / Nawang | CD | 12 | | Canyon Records | CR-7042 | |
| Edge of the Century | R. Carlos Nakai & AmoChip Dabney | CD | 12 | | Canyon Records | CR 70342 | |
| Through Windows & Walls | Peter Kater & R. Carlos Nakai | CD | 9 | | Silver Wave Records | SD 929 | 021585092921 |
| Through Windows & Walls | Peter Kater & R. Carlos Nakai | Cassette | 9 | | Silver Wave Records | SC 929 | 021585092945 |
| Enter >> Tribal | R. Carlos Nakai / Cliff Sarde | (unknown) | 11 | | | | |
| Fourth World | R. Carlos Nakai | (unknown) | 11 | | Canyon Records | CR-7046 | |
| Canyon Trilogy | R. Carlos Nakai | CD | 17 | | Canyon Records | CR-610 | 729337206106 |
| Sanctuary | R. Carlos Nakai | CD | 12 | | Canyon Records | CR-7060 | 2933770602 |
| Best of Nakai | R. Carlos Nakai | CD | 13 | | Canyon Records | CR-7064 | 729337706422 |
| Sounds of the Sheraton Wild Horse Pass Resort & Spa | R. Carlos Nakai& Robert "Tree" Cody& Burning Sky | CD | 13 | | Canyon Records | WH-2001 | 729337200128 |
| Our Beloved Land | R. Carlos Nakai & Keola Beamer | CD | 11 | | Canyon Records | CR-7071 | |
| Music as Medicine | Nawang Khechog and R. Carlos Nakai | CD | 11 | | Sounds True | M855D | 9781591792062 |
| Reconnections | R. Carlos Nakai | CD | 11 | | Canyon Records | CR-7059 | 729337705920 |
| Winds of Devotion | Nawang Khechog & R. Carlos Nakai | CD | 4 | | Sounds True | M1219D | |
| Voyagers | R. Carlos Nakai & Udi Bar-David | CD | 14 | | | | 729337707825 |
| Talisman | R. Carlos Nakai | CD | 13 | | Canyon Records | CR-7084 | 729337708426 |
| Talisman | R. Carlos Nakai | CD | 14 | | Canyon Records | CR-7084 | |
| Dancing into Silence | R. Carlos Nakai / William Eaton / Will Clipman | CD | 14 | | Canyon Records | CR-7089 | 729337708921 |
| Awakening the Fire | R. Carlos Nakai & Will Clipman | CD | 10 | | Canyon Records | CR-7108 | |
| Ritual | Peter Kater & R. Carlos Nakai | (unknown) | 7 | | Mysterium Music | | |
| Canyon Trilogy: Deluxe Platinum Edition | R. Carlos Nakai | CD | 22 | | Canyon Records | CR-7210 | 729337721029 |
| Nocturne | R. Carlos Nakai | CD | 12 | | Canyon Records | CR-7101 | |
| Spiral Rendezvous | R. Carlos Nakai, William Eaton & Will Clipman | CD | 9 | | Canyon Records | CR-7212 | |
| Honorable Sky | Peter Kater & R. Carlos Nakai | Cassette | 8 | | Silver Wave Records | SC 807 | |
| Improvisations in Concert | Peter Kater & R. Carlos Nakai | Cassette | 10 | | Silver Wave Records | SC 910 | |
| Song for Humanity: Celebration of 10 Years | Peter Kater & R. Carlos Nakai | Cassette | 13 | | Silver Wave Records | SC 932 | |
| Feather, Stone & Light | R. Carlos Nakai / William Eaton / Will Clipman | (unknown) | 17 | | | | |
