| 1979 | Chamber Works by Women Composers | Fanny Mendelssohn Hensel, Cécile Chaminade, Amy Beach, Clara Schumann, Teresa Carreño, Germaine Tailleferre, Lili Boulanger; The Macalester Trio | | 2 |
| 1986 | Piano Trios | Fanny Mendelssohn-Hensel, Rebecca Clarke; Clementi-Trio | 1 | 1 |
| 1987 | Klavierwerke, Vol. 1: Das Jahr | Fanny Mendelssohn-Hensel; Liana Șerbescu | | 1 |
| 1992 | Lieder | Fanny Mendelssohn Hensel; Lauralyn Kolb, Arlene Shrut | | 1 |
| 1996 | Kantaten von Fanny Hensel und Felix Mendelssohn | Fanny Hensel, Felix Mendelssohn; Kammerchor der Universität Dortmund, Willi Gundlach | | 1 |
| 1999 | String Quartets | Fanny Mendelssohn-Hensel, Emilie Mayer, M. Laura Lombardini Sirmen; Erato Quartett | | 1 |
| 2004 | Nachtwanderer | Brahms, Hensel, Wolf, Strauss; Ann-Katrin Naidu, Robert Kulek | | 1 |
| 2008 | Piano Music for Four Hands | Felix Mendelssohn Bartholdy, Fanny Mendelssohn Hensel; Tal & Groethuysen | | 1 |
| 2010 | Piano Sonatas in C and G minor | Fanny Mendelssohn-Hensel; Heather Schmidt | | 1 |
| 2013 | Mendelssohn: Felix & Fanny | Felix Mendelssohn, Fanny Mendelssohn; Quatuor Ébène | | 2 |
| 2013 | Frühlingsnacht | Mendelssohn, Mendelssohn, Schubert, Liszt, Schumann; Alexander Krichel | | 2 |
| 2015 | Goethe-Lieder | Fanny Hensel; Tobias Berndt, Alexander Fleischer | | 1 |
| 2015 | Szenen einer Ehe | Fanny, Wilhelm Hensel; Studierende der mdw – Universität für Musik und darstellende Kunst Wien | | 1 |
| 2016 | Stunden, Tage, Ewigkeiten: Heinrich Heine – Lieder | Grieg, Rubinstein, Schubert, Mendelssohn, Hensel, Schumann, Benjamin Appl, James Baillieu | | 1 |
| 2018 | In Between | Schumann, Schumann, Mendelssohn, Mendelssohn; Sophie Pacini | | 1 |
| 2019 | Elles | Schumann, Boulanger, Hensel, Clarke, Fuchs, Pidgorna; Marina Thibeault, Marie-Ève Scarfone | | 1 |
| 2019 | The Leipzig Circle, Vol. I: Chamber Music by Fanny, Clara, Robert & Felix | Fanny, Clara, Robert, Felix; London Bridge Trio | | 1 |
| 2020 | The Mendelssohn Siblings | Mendelssohn, Mendelssohn; Rödberg Trio, Joonas Ahonen, Antti Tikkanen, Markus Hohti | | 2 |
| 2020 | Clara Schumann: Piano Trio / Fanny Mendelssohn: Piano Trio / String Quartet | Clara Schumann, Fanny Mendelssohn; The Nash Ensemble | | 2 |
| 2020 | Complete Works for Cello and Piano | Felix Mendelssohn, Fanny Mendelssohn; Joël Marosi, Esther Walker | | 2 |
| 2021 | Piano Sonatas | Fanny Mendelssohn; Gaia Sokoli | | 2 |
| 2021 | String Quartets | Felix Mendelssohn, Fanny Mendelssohn; Takács Quartet | | 1 |
| 2022 | Fanny & Felix Mendelssohn | Fanny Mendelssohn, Felix Mendelssohn; Trio Chausson | | 1 |
| 2022 | Arias, Lieder, Overtures | Fanny Mendelssohn, Felix Mendelssohn; Chen Reiss, Jewish Chamber Orchestra Munich, Daniel Grossmann | | 1 |
| 2022 | A Woman's Hand | Fanny Mendelssohn Hensel performed by Helen Cawthorne | | 1 |
| 2022 | Piano Music | Fanny Mendelssohn; Martina Frezzotti | | 1 |
| 2022 | Embrace: Songs by Hensel, Liszt, Ullmann, Grieg | Fanny Mendelssohn, Franz Liszt, Viktor Ullmann, Edvard Grieg; Äneas Humm, Renate Rohlfing | | 1 |
| 2022 | Piano Sextet; Piano Quartet; Piano Trio | Fanny Mendelssohn, Felix Mendelssohn; Kaleidoscope Chamber Collective | | 2 |
| 2022 | Klaviermusik 1821–46 | Fanny Hensel; Sontraud Speidel | | 1 |
| 2023 | When in Silence of the Soul | Fanny Mendelssohn; Paula Ríos | | 1 |
| 2023 | Mendelssohn / Tailleferre / Canat de Chizy / Clyne / El-Turk / Holmès / Pépin | Mendelssohn, Tailleferre, Canat de Chizy, Clyne, El-Turk, Holmès, Pépin; Orchestre Pasdeloup, Sora Elisabeth Lee, Monika Wolińska, Chloé Dufresne, Kanako Abe | | 1 |
| 2024 | Felix Mendelssohn: Die erste Walpurgisnacht / Vom Himmel hoch - Fanny Mendelssohn Hensel: Hiob / Gartenlieder | Felix Mendelssohn, Fanny Mendelssohn Hensel; Julia Doyle, Jess Dandy, Mark le Brocq, Ashley Riches, Crouch End Festival Chorus, London Mozart Players, David Temple | | 1 |
| — | Klaviertrios | Felix Mendelssohn, Fanny Mendelssohn; Abegg Trio | | 1 |
| — | Songs Without Words | Felix Mendelssohn, Fanny Mendelssohn; Attacca Quartet | | 1 |
